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Gene Model | |
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Correlation Plot | |
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| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G22212.1 | 0.990696 | Encodes a defensin-like (DEFL) family protein. | OMAT4P006760 | - | - | - |
| AT4G25400.1 | 0.987319 | basix helix-loop-helix (bHLH) family protein | OMAT4P007950 | - | - | - |
| AT5G51780.1 | 0.987313 | basix helix-loop-helix (bHLH) family protein | OMAT5P014950 | - | - | - |
| AT3G25190.1 | 0.985 | nodulin, putative | OMAT3P009450 | - | - | - |
| AT4G12545.1 | 0.984545 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | OMAT4P003190 | - | - | - |
| AT1G52060.1 | 0.983221 | FUNCTIONS IN: molecular_function unknown | OMAT1P112700 | - | - | - |
| AT4G15330.1 | 0.982985 | CYP705A1 | OMAT4P103520 | - | - | - |
| AT2G35980.1 | 0.982733 | YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) | OMAT2P009140 | - | - | - |
| AT1G70850.1 | 0.982135 | MLP34 (MLP-LIKE PROTEIN 34) | OMAT1P117950 | - | - | - |
| AT4G28940.1 | 0.981999 | catalytic | OMAT4P009460 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT2G06780.1 | -0.706042 | transposable element gene | - | - | - | - |
| AT1G20750.1 | -0.702365 | helicase-related | - | - | - | - |
| AT4G13880.1 | -0.665238 | AtRLP48 (Receptor Like Protein 48) | - | - | - | - |
| AT5G31927.1 | -0.651415 | transposable element gene | - | - | - | - |
| AT5G54770.1 | -0.644211 | THI1 | OMAT5P016150 | - | OMAT5P114270 | - |
| AT3G29036.1 | -0.640979 | unknown protein | - | - | - | - |
| AT2G42130.4 | -0.632116 | unknown protein | OMAT2P011420 | - | - | - |
| AT2G05610.1 | -0.630228 | transposable element gene | - | - | - | - |
| AT3G22080.1 | -0.628899 | meprin and TRAF homology domain-containing protein / MATH domain-containing protein | - | - | - | - |
| AT5G31807.1 | -0.627929 | transposable element gene | - | - | - | - |
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 |
:With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) |
Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0006952 | defense response | 20/200 | 4.39 | 7.35e-09 | 3.45E-17 | no |
| B | 3 | GO:0006950 | response to stress | 31/200 | 2.50 | 7.83e-07 | 2.13E-16 | yes |
| B | 3 | GO:0009607 | response to biotic stimulus | 11/200 | 3.04 | 3.07e-04 | - | yes |
| C | 3 | GO:0012505 | endomembrane system | 66/200 | 2.72 | 2.34e-15 | - | no |
| C | 3 | GO:0044464 | cell part | 117/200 | 1.28 | 1.10e-04 | 2.86E-16 | yes |
| C | 4 | GO:0031224 | intrinsic to membrane | 11/200 | 2.05 | 8.07e-03 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 27/200 | 3.20 | 2.70e-08 | - | yes |
| M | 4 | GO:0020037 | heme binding | 12/200 | 6.86 | 2.77e-08 | - | no |
| M | 3 | GO:0046906 | tetrapyrrole binding | 12/200 | 6.29 | 7.54e-08 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 33/200 | 2.43 | 6.61e-07 | - | no |
| M | 4 | GO:0043169 | cation binding | 34/200 | 2.37 | 8.39e-07 | 2.37E-10 | no |
| M | 3 | GO:0043167 | ion binding | 34/200 | 2.37 | 8.39e-07 | 2.65E-15 | no |
| PS | 3 | PO:0009005 | root | 153/200 | 1.70 | 2.12e-20 | 1.43E-16 | yes |
| KW | 0 | hypocotyl | - | 41/200 | 17.57 | 4.00e-40 | 4.73E-18 | no |
| KW | 0 | system | - | 68/200 | 2.81 | 1.40e-16 | 2.91E-15 | no |
| KW | 0 | endomembrane | - | 66/200 | 2.79 | 5.99e-16 | - | no |
| KW | 0 | defense | - | 20/200 | 5.73 | 6.31e-11 | 1.26E-16 | no |
| KW | 0 | electron | - | 17/200 | 4.77 | 2.32e-08 | 7.99E-16 | no |
| KW | 0 | carrier | - | 17/200 | 4.24 | 1.38e-07 | 1.45E-09 | no |
| KW | 0 | response | - | 41/200 | 2.29 | 1.55e-07 | 3.49E-15 | yes |
| KW | 0 | petal | - | 33/200 | 2.26 | 3.29e-06 | 1.28E-18 | no |
| KW | 0 | stage | - | 39/200 | 2.01 | 7.40e-06 | 1.45E-09 | no |
| KW | 0 | differentiation | - | 32/200 | 2.12 | 1.81e-05 | - | no |
| KW | 0 | anthesis | - | 29/200 | 2.21 | 1.99e-05 | - | no |
| KW | 0 | oxygen | - | 10/200 | 4.34 | 2.29e-05 | 6.98E-16 | no |
| KW | 0 | oxidase | - | 11/200 | 4.00 | 2.35e-05 | 2.34E-16 | no |
| KW | 0 | expansion | - | 31/200 | 2.11 | 2.60e-05 | 1.02E-10 | no |
| KW | 0 | metabolic | - | 26/200 | 2.26 | 3.29e-05 | 7.47E-16 | no |
| KW | 0 | putative | - | 42/200 | 1.82 | 4.00e-05 | 2.48E-34 | no |
| KW | 0 | visible | - | 12/200 | 3.24 | 1.00e-04 | 8.05E-17 | no |
| KW | 0 | resistance | - | 10/200 | 3.52 | 1.50e-04 | 1.11E-15 | no |
| KW | 0 | active | - | 19/200 | 2.32 | 2.24e-04 | 1.35E-15 | no |
| KW | 0 | process | - | 36/200 | 1.76 | 2.84e-04 | 9.34E-16 | no |
| KW | 0 | receptor | - | 13/200 | 2.73 | 3.34e-04 | - | no |
| KW | 0 | stimulus | - | 12/200 | 2.79 | 4.29e-04 | - | yes |
| KW | 0 | leaves | - | 13/200 | 2.63 | 4.95e-04 | 9.21E-17 | no |
| KW | 0 | flower | - | 17/200 | 2.23 | 7.06e-04 | - | no |
| KW | 0 | oxidoreductase | - | 12/200 | 2.57 | 8.91e-04 | 2.00E-82 | yes |
| KW | 0 | stress | - | 12/200 | 2.56 | 9.44e-04 | 7.86E-16 | yes |
| KW | 0 | glycosyl | - | 11/200 | 2.58 | 1.30e-03 | - | no |
| KW | 0 | transmembrane | - | 15/200 | 2.07 | 2.72e-03 | 1.77E-16 | no |
| KW | 0 | class | - | 13/200 | 2.17 | 2.96e-03 | 2.00E-82 | no |
| KW | 0 | catalytic | - | 19/200 | 1.87 | 3.10e-03 | - | no |
| KW | 0 | ipr008271 | - | 11/200 | 2.25 | 3.92e-03 | - | no |
| KW | 0 | cotyledon | - | 11/200 | 2.09 | 6.98e-03 | - | no |
| KW | 0 | ipr017442 | - | 11/200 | 2.09 | 7.04e-03 | - | no |
| KW | 0 | kinase | - | 18/200 | 1.71 | 9.82e-03 | 1.01E-15 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |