AT3G12380.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT5G38640.1 0.837681 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein OMAT5P109180 - - -
AT1G10240.1 0.81438 FRS11 (FAR1-related sequence 11) - - - -
AT1G20540.1 0.788801 transducin family protein / WD-40 repeat family protein - - - -
AT1G03000.1 0.7884 PEX6 (PEROXIN 6) - - - -
AT2G44820.2 0.787743 unknown protein OMAT2P012480 - - -
AT3G47120.1 0.784991 RNA recognition motif (RRM)-containing protein - - - -
AT5G61330.1 0.780371 rRNA processing protein-related - - - -
AT2G40316.1 0.779861 unknown protein OMAT2P010740 - - -
AT3G63150.1 0.778764 MIRO2 (MIRO-RELATED GTP-ASE 2) - - - -
AT5G37380.1 0.775095 DNAJ heat shock N-terminal domain-containing protein - - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G35650.1 -0.79334 transposable element gene - - - -
AT3G32465.1 -0.746285 transposable element gene - - - -
AT2G02080.1 -0.741193 AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4) OMAT2P100450 - - -
AT3G14820.1 -0.723446 carboxylesterase/ hydrolase, acting on ester bonds / lipase - - - -
AT2G05082.1 -0.723157 transposable element gene - - - -
AT2G03970.1 -0.712804 transposable element gene - - - -
AT2G10608.1 -0.704311 unknown protein - - - -
AT4G06726.1 -0.701524 transposable element gene - - - -
AT3G02570.1 -0.689219 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) OMAT3P100690 - - -
AT5G35606.1 -0.687281 transposable element gene - - - -

Get whole results

Over-Representation Analysis Result

p-value <= 1.81e-17:20 terms with high significance
1.81e-17 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 5 GO:0006396 RNA processing 13/200 5.87 5.95e-08 - no
B 4 GO:0034641 cellular nitrogen compound metabolic process 37/200 1.90 4.54e-05 - yes
B 5 GO:0016070 RNA metabolic process 21/200 2.47 4.69e-05 - no
B 3 GO:0006807 nitrogen compound metabolic process 37/200 1.86 6.90e-05 - yes
B 5 GO:0090304 nucleic acid metabolic process 30/200 2.00 9.62e-05 - yes
B 4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 32/200 1.90 1.53e-04 - yes
B 3 GO:0009628 response to abiotic stimulus 17/200 2.29 4.97e-04 - no
B 4 GO:0048513 organ development 11/200 2.49 1.77e-03 - no
B 4 GO:0048731 system development 11/200 2.48 1.79e-03 - no
B 3 GO:0044237 cellular metabolic process 64/200 1.35 2.60e-03 - yes
B 4 GO:0044260 cellular macromolecule metabolic process 50/200 1.42 3.22e-03 - yes
B 4 GO:0009725 response to hormone stimulus 10/200 2.12 8.35e-03 - no
B 3 GO:0048856 anatomical structure development 16/200 1.79 8.75e-03 - no
C 3 GO:0005622 intracellular 83/200 1.56 1.67e-06 - yes
C 4 GO:0043231 intracellular membrane-bounded organelle 71/200 1.62 3.98e-06 - yes
C 3 GO:0043227 membrane-bounded organelle 71/200 1.62 4.00e-06 - yes
C 3 GO:0044424 intracellular part 77/200 1.51 1.74e-05 - yes
C 3 GO:0043229 intracellular organelle 71/200 1.54 2.44e-05 - yes
C 5 GO:0005634 nucleus 29/200 1.85 4.35e-04 5.36E-16 yes
C 4 GO:0005737 cytoplasm 55/200 1.47 8.61e-04 2.55E-16 no
C 4 GO:0044444 cytoplasmic part 50/200 1.44 2.36e-03 - no
C 3 GO:0043234 protein complex 14/200 2.14 2.55e-03 5.61E-16 no
M 4 GO:0003723 RNA binding 22/200 3.17 5.44e-07 4.75E-13 no
M 3 GO:0003676 nucleic acid binding 46/200 1.94 3.01e-06 - no
M 3 GO:0005515 protein binding 25/200 1.60 7.41e-03 4.75E-13 no
PS 5 PO:0009052 pedicel 148/200 1.82 2.07e-22 - yes
PS 4 PO:0000037 shoot apex 152/200 1.77 4.48e-22 - yes
PS 5 PO:0020038 petiole 138/200 1.81 1.69e-19 - yes
PS 5 PO:0000013 cauline leaf 139/200 1.80 2.05e-19 - yes
PS 5 PO:0020039 leaf lamina 144/200 1.75 2.55e-19 - yes
PS 3 PO:0009013 meristem 140/200 1.74 3.24e-18 - yes
PS 4 PO:0009025 leaf 151/200 1.64 3.96e-18 4.19E-17 yes
PS 4 PO:0000230 inflorescence meristem 137/200 1.76 4.89e-18 - yes
PS 3 PO:0009005 root 149/200 1.66 4.95e-18 - yes
PS 5 PO:0008037 seedling 147/200 1.67 8.10e-18 1.16E-17 yes
PS 5 PO:0008034 leaf whorl 152/200 1.61 1.81e-17 - yes
PS 4 PO:0008033 phyllome whorl 152/200 1.61 1.81e-17 - yes
PS 3 PO:0009031 sepal 150/200 1.62 2.41e-17 - yes
PS 3 PO:0009032 petal 145/200 1.65 4.84e-17 - yes
PS 4 PO:0009009 embryo 153/200 1.58 7.63e-17 - yes
PS 3 PO:0009010 seed 154/200 1.57 8.56e-17 - yes
PS 4 PO:0009001 fruit 154/200 1.57 1.54e-16 - yes
PS 3 PO:0006342 infructescence 154/200 1.57 1.54e-16 - yes
PS 5 PO:0009027 megasporophyll 140/200 1.67 2.78e-16 - yes
PS 4 PO:0020030 cotyledon 129/200 1.76 3.91e-16 - yes
PS 4 PO:0009047 stem 140/200 1.66 4.48e-16 - yes
PS 3 PO:0006001 phyllome 155/200 1.51 4.83e-15 - yes
PS 4 PO:0009026 sporophyll 143/200 1.59 8.23e-15 - yes
PS 5 PO:0009028 microsporophyll 137/200 1.63 8.33e-15 - yes
PS 3 PO:0009006 shoot 157/200 1.45 2.42e-13 - yes
PS 5 PO:0009046 flower 153/200 1.47 2.44e-13 4.75E-13 yes
PS 4 PO:0009049 inflorescence 153/200 1.46 4.59e-13 - yes
PS 3 PO:0020091 male gametophyte 130/200 1.57 5.51e-12 - yes
PS 3 PO:0000084 sperm cell 53/200 1.63 7.40e-05 - yes
PS 3 PO:0020097 generative cell 53/200 1.63 7.40e-05 - yes
PS 5 PO:0006016 leaf epidermis 21/200 1.89 1.81e-03 - no
PS 5 PO:0006035 shoot epidermis 21/200 1.88 1.98e-03 - no
PS 3 PO:0004013 epidermal cell 21/200 1.76 4.21e-03 1.60E-16 no
PS 4 PO:0000293 guard cell 19/200 1.77 5.80e-03 - no
PS 4 PO:0000351 guard mother cell 19/200 1.76 6.08e-03 - no
PS 3 PO:0000070 meristemoid 19/200 1.76 6.19e-03 - no
PS 4 PO:0005679 epidermis 21/200 1.70 6.49e-03 - no
PS 3 PO:0009014 dermal tissue 21/200 1.70 6.53e-03 - no
PS 5 PO:0000349 epidermal initial 19/200 1.68 9.49e-03 - no
PG 5 PO:0001078 E expanded cotyledon stage 153/200 1.84 1.27e-24 - yes
PG 5 PO:0001081 F mature embryo stage 148/200 1.86 1.63e-23 - yes
PG 5 PO:0004507 D bilateral stage 150/200 1.82 4.94e-23 - yes
PG 5 PO:0001185 C globular stage 146/200 1.78 1.01e-20 - yes
PG 4 PO:0007631 embryo development stages 153/200 1.70 2.31e-20 - yes
PG 3 PO:0001170 seed development stages 153/200 1.69 3.85e-20 - yes
PG 4 PO:0001054 4 leaf senescence stage 138/200 1.79 4.86e-19 - yes
PG 3 PO:0001050 leaf development stages 138/200 1.79 5.14e-19 - yes
PG 3 PO:0007134 A vegetative growth 142/200 1.68 5.97e-17 - yes
PG 5 PO:0007133 leaf production 141/200 1.68 1.00e-16 - yes
PG 4 PO:0007112 1 main shoot growth 141/200 1.68 1.02e-16 - yes
PG 4 PO:0007616 4 anthesis 152/200 1.57 4.05e-16 - yes
PG 5 PO:0007604 corolla developmental stages 152/200 1.54 2.87e-15 - yes
PG 4 PO:0007600 3 floral organ development stages 152/200 1.49 8.43e-14 - yes
PG 3 PO:0007615 flower development stages 153/200 1.46 4.97e-13 - yes
PG 5 PO:0007605 androecium developmental stages 46/200 1.57 5.72e-04 - no
KW 0 ipr000504 - 14/200 8.92 7.09e-11 - no
KW 0 ipr012677 - 13/200 8.41 6.26e-10 - no
KW 0 plait - 13/200 8.41 6.26e-10 - no
KW 0 recognition - 15/200 6.81 9.04e-10 - no
KW 0 nucleotide - 22/200 3.46 1.19e-07 - no
KW 0 nucleic - 22/200 3.37 1.92e-07 4.35E-16 no
KW 0 motif - 18/200 3.70 5.00e-07 - no
KW 0 alpha - 19/200 2.60 4.79e-05 - no
KW 0 mutants - 10/200 4.00 4.84e-05 4.75E-13 no
KW 0 complex - 20/200 2.36 1.27e-04 1.40E-15 no
KW 0 nucleus - 26/200 2.02 2.25e-04 5.36E-16 yes
KW 0 processes - 10/200 3.30 2.59e-04 5.73E-16 no
KW 0 nuclear - 10/200 3.25 2.91e-04 9.36E-16 yes
KW 0 containing - 30/200 1.80 5.86e-04 - no
KW 0 transferase - 14/200 2.28 1.37e-03 - no
KW 0 encodes - 39/200 1.53 2.51e-03 4.75E-13 yes
KW 0 subunit - 15/200 2.05 3.00e-03 4.21E-16 no
KW 0 finger - 17/200 1.84 5.55e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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