Positively Correlated Genes |
Gens | PCC |
Definition |
Overlap gene | Definition |
Overlap gene(antisense) | Definition |
AT2G19760.1 |
0.85073 |
PRF1 (PROFILIN 1) |
OMAT2P102920 |
- |
- |
- |
AT3G09810.1 |
0.824237 |
isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative |
OMAT3P003360 |
- |
- |
- |
AT4G29350.1 |
0.814838 |
PFN2 (PROFILIN 2) |
OMAT4P009670 |
- |
- |
- |
AT3G60820.1 |
0.811533 |
PBF1 |
- |
- |
- |
- |
AT1G56700.1 |
0.811077 |
pyrrolidone-carboxylate peptidase family protein |
OMAT1P015880 |
- |
- |
- |
AT2G40800.1 |
0.807516 |
FUNCTIONS IN: molecular_function unknown |
OMAT2P110150 |
- |
- |
- |
AT3G02180.1 |
0.804785 |
SP1L3 (SPIRAL 1-LIKE3) |
OMAT3P000550 |
- |
- |
- |
AT2G45200.1 |
0.803698 |
GOS12 (GOLGI SNARE 12) |
- |
- |
- |
- |
AT1G75270.1 |
0.795247 |
DHAR2 (DEHYDROASCORBATE REDUCTASE 2) |
OMAT1P119390 |
- |
- |
- |
AT2G28060.1 |
0.791584 |
protein kinase-related |
- |
- |
- |
- |
Negatively Correlated Genes |
Gens | PCC |
Definition |
Overlap gene | Definition |
Overlap gene(antisense) | Definition |
AT2G17090.1 |
-0.827456 |
SSP (SHORT SUSPENSOR) |
- |
- |
- |
- |
AT1G01500.1 |
-0.803438 |
unknown protein |
OMAT1P000220 |
- |
- |
- |
AT4G26701.1 |
-0.799253 |
DNA binding / DNA topoisomerase type I |
- |
- |
- |
- |
AT1G06645.1 |
-0.792002 |
oxidoreductase |
OMAT1P002170 |
- |
- |
- |
AT1G71490.1 |
-0.786107 |
pentatricopeptide (PPR) repeat-containing protein |
- |
- |
OMAT1P020470 |
- |
AT1G54110.1 |
-0.780597 |
cation exchanger, putative (CAX10) |
- |
- |
- |
- |
AT3G33118.1 |
-0.775158 |
transposable element gene |
- |
- |
- |
- |
AT2G13330.1 |
-0.774665 |
transposable element gene |
- |
- |
- |
- |
AT4G18130.1 |
-0.774112 |
PHYE (PHYTOCHROME DEFECTIVE E) |
OMAT4P104520 |
- |
- |
- |
AT2G45600.1 |
-0.771562 |
hydrolase |
OMAT2P012810 |
- |
- |
- |
Type of term (*1) |
Depth of the term in ontology tree |
ID/Term |
Description |
Number of genes |
Over-Representative rate (*2) |
p-value (*3) |
PosMed p-value (*4) (Link to PosMed) |
Found on gene annotation |
---|
B |
4 |
GO:0006091 |
generation of precursor metabolites and energy |
11/200 |
6.88 |
8.64e-08 |
- |
no |
B |
4 |
GO:0006066 |
alcohol metabolic process |
10/200 |
6.42 |
5.49e-07 |
- |
no |
B |
3 |
GO:0006810 |
transport |
26/200 |
2.54 |
4.32e-06 |
- |
no |
B |
3 |
GO:0051234 |
establishment of localization |
26/200 |
2.53 |
4.56e-06 |
- |
no |
B |
3 |
GO:0044281 |
small molecule metabolic process |
23/200 |
2.56 |
1.23e-05 |
- |
no |
B |
5 |
GO:0010038 |
response to metal ion |
10/200 |
4.17 |
3.32e-05 |
- |
no |
B |
3 |
GO:0051641 |
cellular localization |
11/200 |
3.74 |
4.52e-05 |
- |
no |
B |
5 |
GO:0044271 |
cellular nitrogen compound biosynthetic process |
10/200 |
3.78 |
7.97e-05 |
- |
no |
B |
3 |
GO:0051649 |
establishment of localization in cell |
10/200 |
3.71 |
9.34e-05 |
- |
no |
B |
3 |
GO:0009056 |
catabolic process |
14/200 |
2.94 |
1.00e-04 |
- |
no |
B |
4 |
GO:0010035 |
response to inorganic substance |
10/200 |
3.51 |
1.53e-04 |
- |
no |
B |
3 |
GO:0033036 |
macromolecule localization |
11/200 |
3.18 |
2.06e-04 |
- |
no |
B |
4 |
GO:0044283 |
small molecule biosynthetic process |
13/200 |
2.86 |
2.09e-04 |
- |
no |
B |
4 |
GO:0044262 |
cellular carbohydrate metabolic process |
10/200 |
3.23 |
3.06e-04 |
- |
no |
B |
4 |
GO:0044248 |
cellular catabolic process |
10/200 |
2.77 |
1.09e-03 |
- |
no |
B |
4 |
GO:0005975 |
carbohydrate metabolic process |
12/200 |
2.30 |
2.38e-03 |
- |
no |
B |
3 |
GO:0042221 |
response to chemical stimulus |
21/200 |
1.84 |
2.47e-03 |
- |
no |
B |
5 |
GO:0006796 |
phosphate metabolic process |
14/200 |
2.11 |
2.92e-03 |
- |
no |
B |
4 |
GO:0006793 |
phosphorus metabolic process |
14/200 |
2.11 |
2.95e-03 |
- |
no |
B |
3 |
GO:0044238 |
primary metabolic process |
66/200 |
1.33 |
3.41e-03 |
- |
no |
B |
5 |
GO:0006508 |
proteolysis |
10/200 |
2.39 |
3.49e-03 |
- |
no |
B |
3 |
GO:0044237 |
cellular metabolic process |
62/200 |
1.31 |
6.55e-03 |
- |
no |
B |
3 |
GO:0009628 |
response to abiotic stimulus |
14/200 |
1.89 |
7.85e-03 |
- |
no |
|
C |
4 |
GO:0005737 |
cytoplasm |
84/200 |
2.24 |
6.90e-15 |
- |
no |
C |
3 |
GO:0044464 |
cell part |
142/200 |
1.55 |
1.27e-13 |
- |
no |
C |
3 |
GO:0005622 |
intracellular |
99/200 |
1.86 |
1.40e-12 |
- |
no |
C |
3 |
GO:0016020 |
membrane |
65/200 |
2.37 |
2.42e-12 |
- |
no |
C |
4 |
GO:0005886 |
plasma membrane |
40/200 |
3.23 |
9.83e-12 |
- |
no |
C |
3 |
GO:0044424 |
intracellular part |
94/200 |
1.84 |
1.45e-11 |
- |
no |
C |
4 |
GO:0044444 |
cytoplasmic part |
73/200 |
2.10 |
2.60e-11 |
- |
no |
C |
4 |
GO:0043231 |
intracellular membrane-bounded organelle |
77/200 |
1.75 |
3.65e-08 |
- |
no |
C |
3 |
GO:0043227 |
membrane-bounded organelle |
77/200 |
1.75 |
3.67e-08 |
- |
no |
C |
3 |
GO:0043229 |
intracellular organelle |
79/200 |
1.71 |
6.57e-08 |
- |
no |
C |
5 |
GO:0005773 |
vacuole |
16/200 |
4.63 |
8.43e-08 |
- |
no |
C |
4 |
GO:0005618 |
cell wall |
11/200 |
3.31 |
1.41e-04 |
- |
no |
C |
3 |
GO:0030312 |
external encapsulating structure |
11/200 |
3.29 |
1.51e-04 |
- |
no |
C |
3 |
GO:0044446 |
intracellular organelle part |
25/200 |
1.74 |
2.37e-03 |
- |
no |
C |
3 |
GO:0044422 |
organelle part |
25/200 |
1.74 |
2.40e-03 |
- |
no |
C |
5 |
GO:0005739 |
mitochondrion |
13/200 |
2.03 |
5.27e-03 |
- |
no |
C |
3 |
GO:0043234 |
protein complex |
13/200 |
1.99 |
6.37e-03 |
2.00E-05 |
no |
|
M |
4 |
GO:0016788 |
hydrolase activity, acting on ester bonds |
12/200 |
2.02 |
7.08e-03 |
- |
no |
M |
3 |
GO:0005515 |
protein binding |
25/200 |
1.60 |
7.41e-03 |
1.00E-11 |
no |
|
PS |
5 |
PO:0020038 |
petiole |
166/200 |
2.18 |
4.80e-40 |
- |
yes |
PS |
4 |
PO:0020030 |
cotyledon |
161/200 |
2.19 |
7.53e-38 |
- |
yes |
PS |
5 |
PO:0020039 |
leaf lamina |
169/200 |
2.05 |
1.26e-37 |
- |
yes |
PS |
3 |
PO:0009013 |
meristem |
167/200 |
2.08 |
1.77e-37 |
- |
yes |
PS |
5 |
PO:0000013 |
cauline leaf |
162/200 |
2.10 |
1.35e-35 |
- |
yes |
PS |
4 |
PO:0000230 |
inflorescence meristem |
161/200 |
2.07 |
2.09e-34 |
- |
yes |
PS |
4 |
PO:0009047 |
stem |
165/200 |
1.96 |
1.11e-32 |
- |
yes |
PS |
5 |
PO:0009052 |
pedicel |
162/200 |
1.99 |
1.78e-32 |
- |
yes |
PS |
5 |
PO:0009027 |
megasporophyll |
164/200 |
1.95 |
3.74e-32 |
- |
yes |
PS |
4 |
PO:0009025 |
leaf |
170/200 |
1.85 |
2.01e-31 |
- |
yes |
PS |
3 |
PO:0020091 |
male gametophyte |
162/200 |
1.95 |
2.75e-31 |
- |
yes |
PS |
4 |
PO:0000037 |
shoot apex |
164/200 |
1.91 |
1.17e-30 |
- |
yes |
PS |
5 |
PO:0009028 |
microsporophyll |
162/200 |
1.93 |
1.27e-30 |
- |
yes |
PS |
4 |
PO:0009026 |
sporophyll |
167/200 |
1.86 |
2.67e-30 |
- |
yes |
PS |
5 |
PO:0008037 |
seedling |
165/200 |
1.87 |
6.73e-30 |
- |
yes |
PS |
3 |
PO:0009032 |
petal |
164/200 |
1.87 |
1.53e-29 |
- |
yes |
PS |
3 |
PO:0009005 |
root |
164/200 |
1.82 |
5.90e-28 |
- |
yes |
PS |
3 |
PO:0009031 |
sepal |
165/200 |
1.79 |
3.76e-27 |
- |
yes |
PS |
3 |
PO:0006001 |
phyllome |
172/200 |
1.68 |
4.25e-26 |
- |
yes |
PS |
4 |
PO:0009009 |
embryo |
166/200 |
1.72 |
3.32e-25 |
- |
yes |
PS |
5 |
PO:0008034 |
leaf whorl |
164/200 |
1.74 |
3.49e-25 |
- |
yes |
PS |
4 |
PO:0008033 |
phyllome whorl |
164/200 |
1.74 |
3.49e-25 |
- |
yes |
PS |
4 |
PO:0009001 |
fruit |
167/200 |
1.70 |
6.94e-25 |
- |
yes |
PS |
3 |
PO:0006342 |
infructescence |
167/200 |
1.70 |
6.94e-25 |
- |
yes |
PS |
3 |
PO:0009010 |
seed |
166/200 |
1.70 |
1.82e-24 |
- |
yes |
PS |
3 |
PO:0009006 |
shoot |
174/200 |
1.60 |
4.95e-24 |
- |
yes |
PS |
5 |
PO:0009046 |
flower |
170/200 |
1.63 |
1.11e-23 |
- |
yes |
PS |
4 |
PO:0009049 |
inflorescence |
170/200 |
1.62 |
2.57e-23 |
- |
yes |
PS |
5 |
PO:0006035 |
shoot epidermis |
43/200 |
3.84 |
3.80e-15 |
- |
no |
PS |
4 |
PO:0005679 |
epidermis |
45/200 |
3.63 |
6.22e-15 |
- |
no |
PS |
3 |
PO:0009014 |
dermal tissue |
45/200 |
3.63 |
6.33e-15 |
- |
no |
PS |
3 |
PO:0004013 |
epidermal cell |
44/200 |
3.69 |
7.47e-15 |
- |
no |
PS |
5 |
PO:0006016 |
leaf epidermis |
42/200 |
3.78 |
1.45e-14 |
- |
no |
PS |
5 |
PO:0000349 |
epidermal initial |
42/200 |
3.72 |
2.34e-14 |
- |
no |
PS |
4 |
PO:0004011 |
initial cell |
42/200 |
3.70 |
2.92e-14 |
- |
no |
PS |
3 |
PO:0004010 |
meristematic cell |
42/200 |
3.69 |
3.08e-14 |
- |
no |
PS |
4 |
PO:0000293 |
guard cell |
40/200 |
3.72 |
1.08e-13 |
- |
no |
PS |
4 |
PO:0000351 |
guard mother cell |
40/200 |
3.70 |
1.25e-13 |
- |
no |
PS |
3 |
PO:0000070 |
meristemoid |
40/200 |
3.70 |
1.32e-13 |
- |
no |
PS |
4 |
PO:0006345 |
pollen tube |
59/200 |
2.03 |
1.73e-08 |
- |
no |
PS |
3 |
PO:0000084 |
sperm cell |
51/200 |
1.57 |
2.76e-04 |
- |
yes |
PS |
3 |
PO:0020097 |
generative cell |
51/200 |
1.57 |
2.76e-04 |
- |
yes |
|
PG |
5 |
PO:0001081 |
F mature embryo stage |
164/200 |
2.06 |
1.74e-35 |
- |
yes |
PG |
4 |
PO:0001054 |
4 leaf senescence stage |
161/200 |
2.09 |
5.10e-35 |
- |
yes |
PG |
3 |
PO:0001050 |
leaf development stages |
161/200 |
2.09 |
5.50e-35 |
- |
yes |
PG |
5 |
PO:0004507 |
D bilateral stage |
163/200 |
1.98 |
1.68e-32 |
- |
yes |
PG |
5 |
PO:0001078 |
E expanded cotyledon stage |
163/200 |
1.96 |
4.88e-32 |
- |
yes |
PG |
5 |
PO:0007133 |
leaf production |
163/200 |
1.94 |
3.15e-31 |
- |
yes |
PG |
4 |
PO:0007112 |
1 main shoot growth |
163/200 |
1.94 |
3.25e-31 |
- |
yes |
PG |
5 |
PO:0001185 |
C globular stage |
161/200 |
1.96 |
3.95e-31 |
- |
yes |
PG |
3 |
PO:0007134 |
A vegetative growth |
163/200 |
1.92 |
8.40e-31 |
- |
yes |
PG |
3 |
PO:0001170 |
seed development stages |
165/200 |
1.82 |
2.03e-28 |
- |
yes |
PG |
4 |
PO:0007631 |
embryo development stages |
164/200 |
1.82 |
6.53e-28 |
- |
yes |
PG |
4 |
PO:0007600 |
3 floral organ development stages |
172/200 |
1.69 |
1.64e-26 |
- |
yes |
PG |
3 |
PO:0007615 |
flower development stages |
172/200 |
1.64 |
9.12e-25 |
- |
yes |
PG |
4 |
PO:0007616 |
4 anthesis |
165/200 |
1.70 |
2.89e-24 |
- |
yes |
PG |
5 |
PO:0007604 |
corolla developmental stages |
166/200 |
1.68 |
6.27e-24 |
- |
yes |
PG |
5 |
PO:0007605 |
androecium developmental stages |
61/200 |
2.08 |
3.04e-09 |
- |
yes |
|
KW |
0 |
membrane |
- |
61/200 |
2.29 |
6.34e-11 |
- |
no |
KW |
0 |
golgi |
- |
14/200 |
8.43 |
1.55e-10 |
- |
no |
KW |
0 |
plasma |
- |
35/200 |
3.05 |
9.25e-10 |
- |
no |
KW |
0 |
process |
- |
47/200 |
2.29 |
1.53e-08 |
- |
no |
KW |
0 |
subunit |
- |
23/200 |
3.14 |
3.77e-07 |
9.00E-14 |
no |
KW |
0 |
cadmium |
- |
10/200 |
6.00 |
1.06e-06 |
- |
no |
KW |
0 |
complex |
- |
24/200 |
2.83 |
1.39e-06 |
2.00E-05 |
yes |
KW |
0 |
transport |
- |
26/200 |
2.67 |
1.65e-06 |
- |
no |
KW |
0 |
vacuole |
- |
13/200 |
4.13 |
3.99e-06 |
- |
no |
KW |
0 |
biosynthetic |
- |
20/200 |
2.80 |
1.10e-05 |
- |
no |
KW |
0 |
cytoplasm |
- |
12/200 |
3.87 |
1.62e-05 |
- |
no |
KW |
0 |
reticulum |
- |
10/200 |
4.51 |
1.62e-05 |
- |
no |
KW |
0 |
endoplasmic |
- |
10/200 |
4.49 |
1.66e-05 |
- |
no |
KW |
0 |
terminal |
- |
35/200 |
1.82 |
1.83e-04 |
2.00E-05 |
no |
KW |
0 |
small |
- |
11/200 |
2.73 |
8.00e-04 |
- |
no |
KW |
0 |
mediated |
- |
10/200 |
2.83 |
9.28e-04 |
- |
no |
KW |
0 |
stress |
- |
12/200 |
2.56 |
9.44e-04 |
- |
no |
KW |
0 |
response |
- |
31/200 |
1.73 |
9.50e-04 |
- |
no |
KW |
0 |
alpha |
- |
16/200 |
2.19 |
1.12e-03 |
- |
no |
KW |
0 |
metabolic |
- |
22/200 |
1.92 |
1.22e-03 |
- |
no |
KW |
0 |
dependent |
- |
23/200 |
1.72 |
4.06e-03 |
- |
no |
KW |
0 |
synthase |
- |
10/200 |
2.28 |
4.91e-03 |
- |
no |
KW |
0 |
intracellular |
- |
11/200 |
2.13 |
6.01e-03 |
- |
no |
KW |
0 |
conserved |
- |
22/200 |
1.63 |
9.07e-03 |
- |
no |
(*1) |
[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
(*2) |
([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
|
(*3) |
P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200
highly correlated genes, while we had N genes
with the term in the whole genes. |
(*4) |
PosMed is a system which serve a p-values showing a relationship
between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or
protein-protein interactions. |