AT3G20240.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT5G55125.1 0.986129 unknown protein OMAT5P016290 - OMAT5P114360 -
AT5G64670.1 0.983172 ribosomal protein L15 family protein OMAT5P117680 - - -
AT2G44510.1 0.982383 p21Cip1-binding protein-related OMAT2P012390 - - -
AT5G61310.1 0.980489 cytochrome c oxidase subunit Vc, putative / COX5C, putative OMAT5P116480 - - -
AtsnoR8b 0.980155 AtsnoR8b OMAT3P010450 - - -
AT5G02610.1 0.980139 60S ribosomal protein L35 (RPL35D) OMAT5P000650 - - -
AT3G55340.1 0.979365 PHIP1 (PHRAGMOPLASTIN INTERACTING PROTEIN 1) OMAT3P015210 - - -
AtsnoR18a 0.978933 AtsnoR18a - - - -
AT3G58193.1 0.978933 snoRNA - - - -
AT1G03360.1 0.978862 ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) OMAT1P001010 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT4G17170.1 -0.749765 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) OMAT4P104230 - - -
AT1G20620.1 -0.729728 CAT3 (CATALASE 3) OMAT1P007530,OMAT1P007540 [OMAT1P007530]-, [OMAT1P007540]- OMAT1P106670 -
AT1G51402.1 -0.713798 unknown protein OMAT1P014180 - OMAT1P112450 -
AT3G03150.1 -0.688043 unknown protein OMAT3P100900,OMAT3P100910 [OMAT3P100900]-, [OMAT3P100910]- - -
AT3G43640.1 -0.682758 transposable element gene - - - -
AT4G13460.1 -0.675546 SUVH9 OMAT4P102930 - - -
AT3G49460.1 -0.674694 60S acidic ribosomal protein-related - - - -
AT1G34220.1 -0.672345 unknown protein OMAT1P110670 - - -
AT3G15450.1 -0.672155 unknown protein OMAT3P005660 - - -
AT2G23810.1 -0.668214 TET8 (TETRASPANIN8) OMAT2P104250 - OMAT2P004810,OMAT2P004820 [OMAT2P004810]-, [OMAT2P004820]-

Get whole results

Over-Representation Analysis Result

p-value <= 7.86e-18:20 terms with high significance
7.86e-18 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0042254 ribosome biogenesis 24/200 18.74 5.89e-25 - no
B 3 GO:0022613 ribonucleoprotein complex biogenesis 24/200 18.14 1.34e-24 - no
B 5 GO:0009451 RNA modification 16/200 21.11 2.30e-18 - no
B 5 GO:0006364 rRNA processing 14/200 22.38 8.54e-17 - no
B 5 GO:0006396 RNA processing 18/200 8.13 1.25e-12 - no
B 5 GO:0006412 translation 30/200 4.14 9.47e-12 - no
B 4 GO:0010467 gene expression 49/200 2.41 1.44e-09 - no
B 3 GO:0043170 macromolecule metabolic process 66/200 1.71 1.53e-06 - no
B 4 GO:0044260 cellular macromolecule metabolic process 59/200 1.67 1.21e-05 - no
B 4 GO:0019538 protein metabolic process 42/200 1.82 3.98e-05 - no
B 5 GO:0016070 RNA metabolic process 21/200 2.47 4.69e-05 - no
B 3 GO:0044238 primary metabolic process 71/200 1.43 2.58e-04 - no
B 5 GO:0044267 cellular protein metabolic process 35/200 1.72 5.35e-04 - no
B 5 GO:0034645 cellular macromolecule biosynthetic process 34/200 1.58 2.76e-03 - no
B 4 GO:0009059 macromolecule biosynthetic process 34/200 1.57 2.90e-03 - no
B 3 GO:0048856 anatomical structure development 17/200 1.90 3.97e-03 - no
B 5 GO:0090304 nucleic acid metabolic process 24/200 1.60 8.50e-03 - no
C 3 GO:0030529 ribonucleoprotein complex 43/200 12.33 2.72e-35 - no
C 3 GO:0043228 non-membrane-bounded organelle 44/200 7.38 1.40e-26 - no
C 4 GO:0043232 intracellular non-membrane-bounded organelle 44/200 7.38 1.40e-26 - no
C 4 GO:0005840 ribosome 30/200 11.71 2.26e-24 - no
C 4 GO:0033279 ribosomal subunit 21/200 12.93 1.34e-18 - no
C 3 GO:0044424 intracellular part 103/200 2.02 8.65e-16 - yes
C 5 GO:0022626 cytosolic ribosome 19/200 10.32 3.70e-15 - no
C 3 GO:0044446 intracellular organelle part 49/200 3.42 3.72e-15 - yes
C 3 GO:0044422 organelle part 49/200 3.41 3.84e-15 - yes
C 3 GO:0005622 intracellular 104/200 1.95 6.25e-15 - yes
C 5 GO:0015934 large ribosomal subunit 14/200 15.21 3.07e-14 - no
C 4 GO:0070013 intracellular organelle lumen 20/200 7.37 5.63e-13 - no
C 3 GO:0043233 organelle lumen 20/200 7.36 5.88e-13 - no
C 3 GO:0043229 intracellular organelle 91/200 1.97 8.11e-13 - yes
C 5 GO:0005730 nucleolus 16/200 9.33 2.02e-12 - no
C 5 GO:0044445 cytosolic part 15/200 10.02 2.99e-12 - no
C 4 GO:0044444 cytoplasmic part 73/200 2.10 2.60e-11 - yes
C 4 GO:0005737 cytoplasm 75/200 2.00 1.30e-10 - yes
C 5 GO:0031981 nuclear lumen 16/200 6.62 4.39e-10 - no
C 5 GO:0005829 cytosol 19/200 4.59 7.87e-09 - no
C 4 GO:0044428 nuclear part 17/200 5.11 8.19e-09 - no
C 3 GO:0044464 cell part 130/200 1.42 1.34e-08 - yes
C 5 GO:0005739 mitochondrion 23/200 3.59 3.12e-08 3.64E-21 yes
C 4 GO:0044429 mitochondrial part 10/200 7.17 1.84e-07 - yes
C 4 GO:0043231 intracellular membrane-bounded organelle 70/200 1.59 8.09e-06 - yes
C 3 GO:0043227 membrane-bounded organelle 70/200 1.59 8.13e-06 - yes
C 5 GO:0005634 nucleus 26/200 1.66 3.84e-03 - no
M 3 GO:0003735 structural constituent of ribosome 29/200 13.39 2.50e-25 - no
M 5 GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 13/200 2.92 1.70e-04 - no
M 4 GO:0016817 hydrolase activity, acting on acid anhydrides 13/200 2.89 1.88e-04 - no
M 3 GO:0016787 hydrolase activity 28/200 1.79 9.16e-04 - no
PS 4 PO:0000037 shoot apex 147/200 1.71 4.99e-19 - yes
PS 5 PO:0009052 pedicel 142/200 1.75 8.37e-19 - yes
PS 3 PO:0009005 root 145/200 1.61 7.59e-16 - yes
PS 5 PO:0020038 petiole 131/200 1.72 1.01e-15 - yes
PS 3 PO:0009032 petal 139/200 1.59 5.77e-14 - yes
PS 4 PO:0009009 embryo 147/200 1.52 1.05e-13 - yes
PS 3 PO:0009031 sepal 142/200 1.54 3.17e-13 - yes
PS 3 PO:0009010 seed 147/200 1.50 3.65e-13 - yes
PS 4 PO:0009025 leaf 141/200 1.53 6.08e-13 - yes
PS 4 PO:0009001 fruit 147/200 1.49 6.13e-13 - yes
PS 3 PO:0006342 infructescence 147/200 1.49 6.13e-13 - yes
PS 5 PO:0008034 leaf whorl 143/200 1.52 7.79e-13 - yes
PS 4 PO:0008033 phyllome whorl 143/200 1.52 7.79e-13 - yes
PS 5 PO:0020039 leaf lamina 130/200 1.58 3.30e-12 - yes
PS 5 PO:0009028 microsporophyll 131/200 1.56 5.14e-12 - yes
PS 5 PO:0009046 flower 149/200 1.43 1.87e-11 - yes
PS 4 PO:0009049 inflorescence 149/200 1.42 3.34e-11 - yes
PS 3 PO:0006001 phyllome 147/200 1.43 3.60e-11 - yes
PS 4 PO:0009026 sporophyll 135/200 1.50 4.03e-11 - yes
PS 5 PO:0000013 cauline leaf 121/200 1.57 1.17e-10 - yes
PS 3 PO:0009006 shoot 151/200 1.39 1.55e-10 - yes
PS 5 PO:0009027 megasporophyll 127/200 1.51 2.63e-10 - yes
PS 5 PO:0008037 seedling 130/200 1.47 8.61e-10 - yes
PS 4 PO:0009047 stem 123/200 1.46 1.21e-08 - yes
PS 4 PO:0020030 cotyledon 107/200 1.46 4.47e-07 - no
PS 3 PO:0009013 meristem 114/200 1.42 5.30e-07 - no
PS 4 PO:0000230 inflorescence meristem 111/200 1.43 6.32e-07 - no
PG 5 PO:0001081 F mature embryo stage 143/200 1.80 2.11e-20 - yes
PG 5 PO:0001078 E expanded cotyledon stage 145/200 1.75 1.42e-19 - yes
PG 5 PO:0004507 D bilateral stage 144/200 1.75 2.37e-19 - yes
PG 5 PO:0001185 C globular stage 141/200 1.72 7.86e-18 - yes
PG 4 PO:0007631 embryo development stages 146/200 1.62 2.42e-16 - yes
PG 3 PO:0001170 seed development stages 146/200 1.61 3.81e-16 - yes
PG 3 PO:0007134 A vegetative growth 135/200 1.59 1.96e-13 - yes
PG 5 PO:0007133 leaf production 134/200 1.59 3.03e-13 - yes
PG 4 PO:0007112 1 main shoot growth 134/200 1.59 3.09e-13 - yes
PG 4 PO:0007616 4 anthesis 145/200 1.50 1.34e-12 - yes
PG 5 PO:0007604 corolla developmental stages 146/200 1.48 2.62e-12 - yes
PG 4 PO:0001054 4 leaf senescence stage 123/200 1.60 1.25e-11 - yes
PG 3 PO:0001050 leaf development stages 123/200 1.60 1.31e-11 - yes
PG 4 PO:0007600 3 floral organ development stages 146/200 1.43 5.30e-11 - yes
PG 3 PO:0007615 flower development stages 148/200 1.41 9.81e-11 - yes
KW 0 ribosome - 31/200 11.74 3.67e-25 - no
KW 0 ribosomal - 32/200 10.60 1.66e-24 - no
KW 0 constituent - 29/200 10.35 4.52e-22 - no
KW 0 structural - 29/200 8.27 2.53e-19 - no
KW 0 translation - 33/200 6.66 7.80e-19 - no
KW 0 cytosolic - 20/200 9.34 5.65e-15 - no
KW 0 subunit - 32/200 4.36 4.56e-13 - no
KW 0 large - 15/200 9.78 4.30e-12 - no
KW 0 nucleolus - 14/200 10.30 9.21e-12 - no
KW 0 mitochondrial - 17/200 7.54 1.67e-11 0 yes
KW 0 biogenesis - 12/200 8.83 1.35e-09 - no
KW 0 ipr002885 - 15/200 5.35 2.74e-08 - no
KW 0 pentatricopeptide - 15/200 5.16 4.49e-08 - no
KW 0 intracellular - 19/200 3.68 2.83e-07 - no
KW 0 mitochondrion - 18/200 3.28 2.97e-06 3.64E-21 no
KW 0 defective - 11/200 4.49 7.44e-06 - no
KW 0 terminal - 37/200 1.92 3.71e-05 - no
KW 0 repeat - 28/200 2.16 4.13e-05 - no
KW 0 small - 13/200 3.23 6.03e-05 - no
KW 0 conserved - 28/200 2.07 8.65e-05 - no
KW 0 nucleic - 17/200 2.60 1.10e-04 - no
KW 0 embryo - 17/200 2.45 2.31e-04 - no
KW 0 nucleotide - 15/200 2.36 7.11e-04 1.00E-15 yes
KW 0 motif - 12/200 2.47 1.30e-03 - no
KW 0 development - 14/200 2.01 4.60e-03 - no
KW 0 biological_process - 75/200 1.25 8.35e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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