AT3G25890.2 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G53330.1 0.956982 pentatricopeptide (PPR) repeat-containing protein OMAT1P014740 - - -
AT1G31970.1 0.951878 STRS1 (STRESS RESPONSE SUPPRESSOR 1) OMAT1P011220 - - -
AT4G33170.1 0.945468 pentatricopeptide (PPR) repeat-containing protein - - - -
AT3G16610.1 0.932302 pentatricopeptide (PPR) repeat-containing protein - - - -
AT4G27380.1 0.930641 unknown protein OMAT4P008690 - - -
AT1G17470.1 0.930187 ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1) OMAT1P006470 - - -
AT2G29760.1 0.9301 pentatricopeptide (PPR) repeat-containing protein OMAT2P006930 - - -
AT3G25940.1 0.927485 transcription factor S-II (TFIIS) domain-containing protein - - - -
AT1G32580.1 0.926704 plastid developmental protein DAG, putative OMAT1P011410 - - -
AT5G61770.2 0.924463 PPAN (PETER PAN-LIKE PROTEIN) OMAT5P018810 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT4G36160.1 -0.769768 ANAC076 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76) - - - -
AT2G23810.1 -0.74733 TET8 (TETRASPANIN8) OMAT2P104250 - OMAT2P004810,OMAT2P004820 [OMAT2P004810]-, [OMAT2P004820]-
AT3G53990.1 -0.723285 universal stress protein (USP) family protein OMAT3P112910 - - -
AT3G53420.1 -0.708538 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) OMAT3P112710,OMAT3P112715 [OMAT3P112710]-, [OMAT3P112715]- OMAT3P014560 -
AT3G02880.1 -0.707401 leucine-rich repeat transmembrane protein kinase, putative OMAT3P000870 - - -
AT5G36160.1 -0.705677 aminotransferase-related OMAT5P108800 - - -
AT3G15810.1 -0.704238 unknown protein OMAT3P105310 - - -
AT3G06580.1 -0.703951 GALK - - - -
AT3G43640.1 -0.703734 transposable element gene - - - -
AT2G38510.1 -0.700455 MATE efflux protein-related - - - -

Get whole results

Over-Representation Analysis Result

p-value <= 1.62e-15:20 terms with high significance
1.62e-15 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0042254 ribosome biogenesis 11/200 8.59 7.44e-09 - no
B 5 GO:0006396 RNA processing 14/200 6.33 7.91e-09 - no
B 3 GO:0022613 ribonucleoprotein complex biogenesis 11/200 8.31 1.07e-08 - no
B 5 GO:0016070 RNA metabolic process 21/200 2.47 4.69e-05 - yes
B 3 GO:0006996 organelle organization 10/200 3.00 5.80e-04 - no
B 5 GO:0090304 nucleic acid metabolic process 26/200 1.73 2.23e-03 - yes
B 4 GO:0010467 gene expression 31/200 1.52 6.76e-03 - yes
C 5 GO:0005730 nucleolus 13/200 7.58 2.38e-09 - no
C 4 GO:0070013 intracellular organelle lumen 16/200 5.90 2.49e-09 - no
C 3 GO:0043233 organelle lumen 16/200 5.89 2.57e-09 - no
C 5 GO:0031981 nuclear lumen 15/200 6.20 3.46e-09 - no
C 5 GO:0005739 mitochondrion 23/200 3.59 3.12e-08 - no
C 4 GO:0044428 nuclear part 15/200 4.51 2.80e-07 - no
C 3 GO:0043228 non-membrane-bounded organelle 20/200 3.36 6.62e-07 - no
C 4 GO:0043232 intracellular non-membrane-bounded organelle 20/200 3.36 6.62e-07 - no
C 3 GO:0044424 intracellular part 81/200 1.59 1.09e-06 - yes
C 3 GO:0005622 intracellular 83/200 1.56 1.67e-06 - yes
C 3 GO:0030529 ribonucleoprotein complex 13/200 3.73 1.26e-05 - no
C 3 GO:0043229 intracellular organelle 71/200 1.54 2.44e-05 - yes
C 4 GO:0005737 cytoplasm 59/200 1.58 7.56e-05 - no
C 4 GO:0043231 intracellular membrane-bounded organelle 66/200 1.50 1.12e-04 - yes
C 3 GO:0043227 membrane-bounded organelle 66/200 1.50 1.12e-04 - yes
C 3 GO:0044446 intracellular organelle part 28/200 1.95 2.30e-04 - no
C 3 GO:0044422 organelle part 28/200 1.95 2.34e-04 - no
C 4 GO:0044444 cytoplasmic part 51/200 1.47 1.37e-03 - no
C 5 GO:0005634 nucleus 25/200 1.60 7.34e-03 3.64E-21 yes
M 3 GO:0003676 nucleic acid binding 46/200 1.94 3.01e-06 - yes
M 4 GO:0003723 RNA binding 19/200 2.74 2.39e-05 1.00E-10 no
M 5 GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 12/200 2.70 5.83e-04 - no
M 4 GO:0016817 hydrolase activity, acting on acid anhydrides 12/200 2.67 6.36e-04 - no
M 3 GO:0000166 nucleotide binding 23/200 1.74 3.40e-03 - no
M 4 GO:0032553 ribonucleotide binding 17/200 1.73 9.93e-03 - no
M 5 GO:0032555 purine ribonucleotide binding 17/200 1.73 9.93e-03 - no
PS 4 PO:0000037 shoot apex 152/200 1.77 4.48e-22 - yes
PS 5 PO:0009052 pedicel 146/200 1.80 3.65e-21 - yes
PS 5 PO:0020038 petiole 133/200 1.75 9.45e-17 - yes
PS 4 PO:0009047 stem 141/200 1.67 1.33e-16 - yes
PS 3 PO:0009010 seed 153/200 1.56 3.07e-16 - yes
PS 4 PO:0009001 fruit 153/200 1.56 5.47e-16 - yes
PS 3 PO:0006342 infructescence 153/200 1.56 5.47e-16 - yes
PS 4 PO:0009025 leaf 147/200 1.60 6.38e-16 - yes
PS 4 PO:0009009 embryo 151/200 1.56 9.44e-16 - yes
PS 5 PO:0020039 leaf lamina 137/200 1.66 1.62e-15 - yes
PS 3 PO:0009005 root 144/200 1.60 2.51e-15 - yes
PS 5 PO:0009028 microsporophyll 137/200 1.63 8.33e-15 - yes
PS 5 PO:0008034 leaf whorl 147/200 1.56 8.79e-15 - yes
PS 4 PO:0008033 phyllome whorl 147/200 1.56 8.79e-15 - yes
PS 3 PO:0009031 sepal 145/200 1.57 1.09e-14 - yes
PS 5 PO:0000013 cauline leaf 130/200 1.68 1.19e-14 - yes
PS 5 PO:0009046 flower 154/200 1.48 7.71e-14 - yes
PS 4 PO:0009049 inflorescence 154/200 1.47 1.47e-13 - yes
PS 3 PO:0009032 petal 138/200 1.57 1.73e-13 - yes
PS 3 PO:0006001 phyllome 151/200 1.47 5.18e-13 - yes
PS 5 PO:0008037 seedling 137/200 1.55 9.64e-13 - yes
PS 4 PO:0009026 sporophyll 138/200 1.53 1.98e-12 - yes
PS 3 PO:0009006 shoot 155/200 1.43 2.34e-12 2.00E-08 yes
PS 5 PO:0009027 megasporophyll 129/200 1.54 4.04e-11 - yes
PS 4 PO:0000230 inflorescence meristem 120/200 1.54 4.46e-10 - yes
PS 3 PO:0009013 meristem 120/200 1.49 4.86e-09 - yes
PS 4 PO:0020030 cotyledon 111/200 1.51 2.09e-08 - yes
PS 3 PO:0000084 sperm cell 51/200 1.57 2.76e-04 - no
PS 3 PO:0020097 generative cell 51/200 1.57 2.76e-04 - no
PS 3 PO:0020091 male gametophyte 102/200 1.23 2.58e-03 - yes
PG 5 PO:0001078 E expanded cotyledon stage 153/200 1.84 1.27e-24 - yes
PG 5 PO:0004507 D bilateral stage 151/200 1.83 1.10e-23 - yes
PG 5 PO:0001081 F mature embryo stage 148/200 1.86 1.63e-23 - yes
PG 4 PO:0007631 embryo development stages 153/200 1.70 2.31e-20 - yes
PG 3 PO:0001170 seed development stages 153/200 1.69 3.85e-20 - yes
PG 5 PO:0001185 C globular stage 145/200 1.77 4.03e-20 - yes
PG 4 PO:0007600 3 floral organ development stages 157/200 1.54 1.85e-16 - yes
PG 5 PO:0007604 corolla developmental stages 153/200 1.55 8.38e-16 - yes
PG 4 PO:0001054 4 leaf senescence stage 131/200 1.70 2.59e-15 - yes
PG 3 PO:0001050 leaf development stages 131/200 1.70 2.72e-15 - yes
PG 3 PO:0007615 flower development stages 157/200 1.50 4.40e-15 - yes
PG 3 PO:0007134 A vegetative growth 137/200 1.62 2.18e-14 - yes
PG 5 PO:0007133 leaf production 135/200 1.60 1.03e-13 - yes
PG 4 PO:0007112 1 main shoot growth 135/200 1.60 1.05e-13 - yes
PG 4 PO:0007616 4 anthesis 147/200 1.52 1.51e-13 - yes
KW 0 ipr002885 - 30/200 10.70 3.30e-23 - no
KW 0 pentatricopeptide - 30/200 10.33 9.55e-23 - no
KW 0 repeat - 45/200 3.47 3.48e-14 - no
KW 0 nucleolus - 13/200 9.56 1.16e-10 - no
KW 0 mitochondrion - 23/200 4.19 1.63e-09 - no
KW 0 containing - 42/200 2.52 6.63e-09 0 yes
KW 0 helicase - 10/200 6.42 5.49e-07 - no
KW 0 embryo - 21/200 3.02 2.05e-06 - no
KW 0 defective - 11/200 4.49 7.44e-06 - no
KW 0 mitochondrial - 10/200 4.43 1.88e-05 - no
KW 0 biological_process - 86/200 1.44 2.99e-05 - no
KW 0 ribosome - 10/200 3.79 7.81e-05 - no
KW 0 motif - 14/200 2.88 1.23e-04 - no
KW 0 nucleotide - 16/200 2.51 2.43e-04 - no
KW 0 ribosomal - 10/200 3.31 2.50e-04 - no
KW 0 translation - 13/200 2.62 5.01e-04 - no
KW 0 superfamily - 10/200 2.64 1.61e-03 - no
KW 0 nucleic - 13/200 1.99 6.32e-03 - no
KW 0 subunit - 14/200 1.91 7.15e-03 - no
KW 0 terminal - 29/200 1.50 9.96e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
Top Page