AT3G51800.2 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G48630.1 0.965396 RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B) OMAT1P111800 - - -
AT3G18130.1 0.960122 RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) OMAT3P106060 - - -
AT1G18540.1 0.96008 60S ribosomal protein L6 (RPL6A) OMAT1P105940 - - -
AT5G59850.1 0.955551 40S ribosomal protein S15A (RPS15aF) OMAT5P116020 - - -
AT4G38890.1 0.955272 dihydrouridine synthase family protein OMAT4P111850 - - -
AT4G10480.1 0.955069 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative OMAT4P102090 - OMAT4P002550 -
AT1G07070.1 0.954192 60S ribosomal protein L35a (RPL35aA) OMAT1P002275 - - -
AT3G49010.1 0.953641 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) OMAT3P111280 - - -
AT1G56110.1 0.953156 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) OMAT1P113970 - - -
AT3G21110.1 0.95264 PUR7 (PURIN 7) OMAT3P106930 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT3G03150.1 -0.834373 unknown protein OMAT3P100900,OMAT3P100910 [OMAT3P100900]-, [OMAT3P100910]- - -
AT4G17170.1 -0.799223 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) OMAT4P104230 - - -
AT5G27280.1 -0.776778 zinc finger (DNL type) family protein OMAT5P009230 - OMAT5P108030 -
AT1G20620.1 -0.744668 CAT3 (CATALASE 3) OMAT1P007530,OMAT1P007540 [OMAT1P007530]-, [OMAT1P007540]- OMAT1P106670 -
AT2G36895.1 -0.730385 unknown protein OMAT2P108545 - - -
AT5G66211.1 -0.707951 unknown protein - - - -
AT1G37007.1 -0.703093 unknown protein - - - -
AT3G12400.1 -0.702434 ELC OMAT3P104070 - OMAT3P004350 -
AT1G55000.1 -0.701086 peptidoglycan-binding LysM domain-containing protein OMAT1P015300 - - -
AT3G52070.1 -0.699599 unknown protein OMAT3P014050 - - -

Get whole results

Over-Representation Analysis Result

p-value <= 1.29e-56:20 terms with high significance
1.29e-56 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 5 GO:0006412 translation 75/200 10.34 1.29e-56 1.21E-16 no
B 4 GO:0010467 gene expression 88/200 4.32 4.70e-36 - no
B 3 GO:0022613 ribonucleoprotein complex biogenesis 30/200 22.67 2.66e-33 - no
B 4 GO:0042254 ribosome biogenesis 29/200 22.64 3.07e-32 - no
B 5 GO:0044267 cellular protein metabolic process 81/200 3.97 3.45e-30 - no
B 5 GO:0034645 cellular macromolecule biosynthetic process 79/200 3.66 5.65e-27 - no
B 4 GO:0009059 macromolecule biosynthetic process 79/200 3.65 6.93e-27 - no
B 4 GO:0019538 protein metabolic process 81/200 3.51 1.72e-26 - yes
B 4 GO:0044249 cellular biosynthetic process 88/200 3.13 1.66e-25 - no
B 4 GO:0044260 cellular macromolecule metabolic process 98/200 2.78 5.37e-25 - no
B 3 GO:0009058 biosynthetic process 88/200 3.02 1.92e-24 - no
B 3 GO:0043170 macromolecule metabolic process 98/200 2.53 7.40e-22 - yes
B 3 GO:0044237 cellular metabolic process 109/200 2.31 1.07e-21 - no
B 3 GO:0044238 primary metabolic process 108/200 2.18 2.11e-19 - yes
B 5 GO:0006396 RNA processing 13/200 5.87 5.95e-08 - no
B 5 GO:0016070 RNA metabolic process 16/200 1.88 5.39e-03 - no
C 4 GO:0005840 ribosome 74/200 28.88 5.62e-90 - no
C 4 GO:0033279 ribosomal subunit 65/200 40.03 6.22e-89 - no
C 3 GO:0030529 ribonucleoprotein complex 79/200 22.65 2.08e-87 - no
C 3 GO:0043228 non-membrane-bounded organelle 91/200 15.27 1.56e-85 - yes
C 4 GO:0043232 intracellular non-membrane-bounded organelle 91/200 15.27 1.56e-85 - yes
C 5 GO:0022626 cytosolic ribosome 64/200 34.78 4.20e-83 - no
C 5 GO:0044445 cytosolic part 59/200 39.40 4.18e-80 - no
C 5 GO:0005829 cytosol 65/200 15.71 1.75e-60 - no
C 5 GO:0015934 large ribosomal subunit 42/200 45.64 3.15e-60 - no
C 3 GO:0044446 intracellular organelle part 96/200 6.70 8.53e-57 - yes
C 3 GO:0044422 organelle part 96/200 6.69 9.21e-57 - yes
C 3 GO:0043229 intracellular organelle 134/200 2.90 9.57e-41 - yes
C 3 GO:0044424 intracellular part 138/200 2.71 4.85e-39 - yes
C 3 GO:0005622 intracellular 140/200 2.63 1.99e-38 - yes
C 4 GO:0044444 cytoplasmic part 115/200 3.31 2.85e-38 - no
C 4 GO:0005737 cytoplasm 115/200 3.07 4.89e-35 - no
C 5 GO:0005730 nucleolus 32/200 18.67 1.59e-32 - yes
C 4 GO:0070013 intracellular organelle lumen 37/200 13.64 3.72e-32 - yes
C 3 GO:0043233 organelle lumen 37/200 13.61 4.04e-32 - yes
C 5 GO:0031981 nuclear lumen 34/200 14.06 4.00e-30 - yes
C 5 GO:0015935 small ribosomal subunit 23/200 32.69 4.13e-30 - no
C 4 GO:0044428 nuclear part 34/200 10.22 2.06e-25 - yes
C 3 GO:0044464 cell part 151/200 1.65 2.24e-18 - yes
C 4 GO:0043231 intracellular membrane-bounded organelle 91/200 2.07 3.72e-14 - yes
C 3 GO:0043227 membrane-bounded organelle 91/200 2.07 3.75e-14 - yes
C 5 GO:0005634 nucleus 43/200 2.75 2.87e-10 3.64E-21 yes
C 5 GO:0005739 mitochondrion 25/200 3.91 1.52e-09 - no
C 3 GO:0016020 membrane 56/200 2.04 3.18e-08 3.64E-21 yes
C 4 GO:0005886 plasma membrane 33/200 2.66 7.93e-08 3.64E-21 yes
C 4 GO:0005618 cell wall 14/200 4.22 1.45e-06 - no
C 3 GO:0030312 external encapsulating structure 14/200 4.19 1.59e-06 - no
C 5 GO:0009536 plastid 30/200 1.62 2.97e-03 - no
M 3 GO:0003735 structural constituent of ribosome 72/200 33.25 2.73e-92 - no
M 3 GO:0000166 nucleotide binding 31/200 2.35 2.99e-06 - no
M 4 GO:0003723 RNA binding 20/200 2.88 7.12e-06 - no
M 4 GO:0017076 purine nucleotide binding 20/200 1.93 1.76e-03 - no
M 5 GO:0032555 purine ribonucleotide binding 19/200 1.94 2.09e-03 - no
M 4 GO:0032553 ribonucleotide binding 19/200 1.94 2.09e-03 - no
M 5 GO:0030554 adenyl nucleotide binding 17/200 1.88 4.43e-03 - no
M 4 GO:0001883 purine nucleoside binding 17/200 1.88 4.43e-03 - no
M 3 GO:0001882 nucleoside binding 17/200 1.87 4.55e-03 - no
PS 5 PO:0020038 petiole 165/200 2.17 3.90e-39 - yes
PS 5 PO:0020039 leaf lamina 166/200 2.01 5.65e-35 - yes
PS 5 PO:0009052 pedicel 164/200 2.02 3.97e-34 - yes
PS 4 PO:0000037 shoot apex 167/200 1.94 4.06e-33 - yes
PS 4 PO:0009025 leaf 170/200 1.85 2.01e-31 - yes
PS 3 PO:0009032 petal 165/200 1.88 2.48e-30 - yes
PS 5 PO:0000013 cauline leaf 155/200 2.01 5.39e-30 - yes
PS 5 PO:0008037 seedling 163/200 1.85 2.42e-28 - yes
PS 3 PO:0009005 root 164/200 1.82 5.90e-28 - yes
PS 4 PO:0020030 cotyledon 147/200 2.00 6.05e-27 - yes
PS 5 PO:0009028 microsporophyll 157/200 1.87 7.42e-27 - yes
PS 5 PO:0009027 megasporophyll 157/200 1.87 8.68e-27 - yes
PS 5 PO:0008034 leaf whorl 166/200 1.76 1.15e-26 - yes
PS 4 PO:0008033 phyllome whorl 166/200 1.76 1.15e-26 - yes
PS 3 PO:0009031 sepal 164/200 1.78 2.11e-26 - yes
PS 4 PO:0009009 embryo 167/200 1.73 5.99e-26 - yes
PS 3 PO:0009010 seed 167/200 1.71 3.37e-25 - yes
PS 4 PO:0009001 fruit 167/200 1.70 6.94e-25 - yes
PS 3 PO:0006342 infructescence 167/200 1.70 6.94e-25 - yes
PS 3 PO:0006001 phyllome 170/200 1.66 1.45e-24 - yes
PS 4 PO:0009047 stem 154/200 1.83 1.98e-24 - yes
PS 3 PO:0009013 meristem 150/200 1.87 2.57e-24 - yes
PS 4 PO:0009026 sporophyll 159/200 1.77 2.61e-24 - yes
PS 4 PO:0000230 inflorescence meristem 145/200 1.87 9.12e-23 - yes
PS 3 PO:0009006 shoot 171/200 1.57 8.33e-22 - yes
PS 5 PO:0009046 flower 167/200 1.61 1.51e-21 - yes
PS 4 PO:0009049 inflorescence 167/200 1.60 3.38e-21 - yes
PS 4 PO:0000293 guard cell 43/200 4.00 9.12e-16 - no
PS 4 PO:0000351 guard mother cell 43/200 3.98 1.07e-15 - no
PS 3 PO:0000070 meristemoid 43/200 3.97 1.14e-15 - no
PS 5 PO:0006016 leaf epidermis 43/200 3.87 2.96e-15 - no
PS 5 PO:0006035 shoot epidermis 43/200 3.84 3.80e-15 - no
PS 5 PO:0000349 epidermal initial 43/200 3.81 4.87e-15 - no
PS 4 PO:0004011 initial cell 43/200 3.79 6.10e-15 - no
PS 3 PO:0004010 meristematic cell 43/200 3.78 6.45e-15 - no
PS 3 PO:0020091 male gametophyte 136/200 1.64 9.12e-15 - yes
PS 3 PO:0004013 epidermal cell 43/200 3.61 3.49e-14 - no
PS 4 PO:0005679 epidermis 43/200 3.47 1.28e-13 - no
PS 3 PO:0009014 dermal tissue 43/200 3.47 1.31e-13 - no
PS 3 PO:0000084 sperm cell 54/200 1.66 3.70e-05 - no
PS 3 PO:0020097 generative cell 54/200 1.66 3.70e-05 - no
PG 5 PO:0001081 F mature embryo stage 166/200 2.09 3.15e-37 - yes
PG 5 PO:0004507 D bilateral stage 166/200 2.02 5.13e-35 - yes
PG 5 PO:0001078 E expanded cotyledon stage 166/200 2.00 1.55e-34 - yes
PG 5 PO:0001185 C globular stage 165/200 2.01 2.10e-34 - yes
PG 3 PO:0007134 A vegetative growth 165/200 1.95 2.02e-32 - yes
PG 5 PO:0007133 leaf production 164/200 1.95 4.91e-32 - yes
PG 4 PO:0007112 1 main shoot growth 164/200 1.95 5.06e-32 - yes
PG 4 PO:0001054 4 leaf senescence stage 157/200 2.04 8.81e-32 - yes
PG 3 PO:0001050 leaf development stages 157/200 2.04 9.48e-32 - yes
PG 4 PO:0007631 embryo development stages 166/200 1.84 1.82e-29 - yes
PG 3 PO:0001170 seed development stages 166/200 1.84 3.36e-29 - yes
PG 5 PO:0007604 corolla developmental stages 167/200 1.69 1.18e-24 - yes
PG 4 PO:0007616 4 anthesis 165/200 1.70 2.89e-24 - yes
PG 4 PO:0007600 3 floral organ development stages 168/200 1.65 1.72e-23 - yes
PG 3 PO:0007615 flower development stages 168/200 1.60 7.64e-22 - yes
KW 0 ribosome - 78/200 29.54 6.17e-96 - no
KW 0 ribosomal - 80/200 26.50 1.98e-94 - no
KW 0 constituent - 73/200 26.05 3.77e-85 - no
KW 0 structural - 73/200 20.82 1.38e-77 6.23E-16 yes
KW 0 translation - 78/200 15.74 2.24e-73 1.21E-16 no
KW 0 cytosolic - 58/200 27.09 3.10e-68 - no
KW 0 subunit - 77/200 10.50 9.22e-59 - no
KW 0 large - 39/200 25.43 7.33e-45 - no
KW 0 nucleolus - 27/200 19.86 1.59e-28 - yes
KW 0 biogenesis - 25/200 18.39 1.09e-25 - no
KW 0 small - 31/200 7.69 1.31e-19 - no
KW 0 conserved - 42/200 3.10 1.05e-11 - no
KW 0 eukaryotic - 16/200 8.14 1.79e-11 - no
KW 0 ipr002885 - 16/200 5.71 4.06e-09 - no
KW 0 pentatricopeptide - 16/200 5.51 6.89e-09 - no
KW 0 mitochondrion - 22/200 4.01 8.07e-09 - no
KW 0 processing - 11/200 7.75 2.33e-08 - no
KW 0 mitochondrial - 13/200 5.76 7.51e-08 - no
KW 0 nucleotide - 21/200 3.30 4.84e-07 - no
KW 0 components - 10/200 6.16 8.27e-07 - no
KW 0 membrane - 48/200 1.80 1.35e-05 3.64E-21 yes
KW 0 intracellular - 15/200 2.91 6.91e-05 - no
KW 0 complex - 20/200 2.36 1.27e-04 1.40E-15 no
KW 0 repeat - 26/200 2.00 2.50e-04 - no
KW 0 nuclear - 10/200 3.25 2.91e-04 - yes
KW 0 terminal - 34/200 1.76 3.86e-04 - no
KW 0 alpha - 17/200 2.33 4.14e-04 - no
KW 0 plasma - 23/200 2.01 5.12e-04 3.64E-21 yes
KW 0 nucleic - 15/200 2.29 9.44e-04 - no
KW 0 stress - 10/200 2.13 7.91e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
Top Page