AT3G59770.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT3G06620.1 0.940755 protein kinase family protein OMAT3P102290 - - -
AT5G11700.2 0.9233 glycine-rich protein OMAT5P103260 - - -
AT5G18525.1 0.914004 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase OMAT5P105420 - - -
AT1G07200.2 0.906536 ATP-dependent Clp protease ClpB protein-related OMAT1P102110 - - -
AT3G48050.1 0.906364 DNA binding / protein binding / transcription regulator OMAT3P110950 - - -
AT1G03080.1 0.903756 FUNCTIONS IN: molecular_function unknown OMAT1P100670 - OMAT1P000840 -
AT3G13870.1 0.900056 RHD3 (ROOT HAIR DEFECTIVE 3) OMAT3P104610 - - -
AT2G38020.1 0.897988 VCL1 (VACUOLELESS 1) OMAT2P108990 - - -
AT1G08800.1 0.887907 unknown protein OMAT1P102710 - - -
AT5G06600.1 0.885863 UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) OMAT5P101750 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT4G10750.1 -0.81006 HpcH/HpaI aldolase family protein OMAT4P002630 - - -
AT1G69680.1 -0.793422 FUNCTIONS IN: molecular_function unknown OMAT1P019790 - - -
AT1G27870.1 -0.790344 nucleic acid binding - - - -
AT4G01820.1 -0.78453 PGP3 (P-GLYCOPROTEIN 3) - - - -
AT3G26483.1 -0.781297 transposable element gene - - - -
AT2G19820.1 -0.77851 LBD9 (LOB DOMAIN-CONTAINING PROTEIN 9) - - - -
AT3G42203.1 -0.775558 transposable element gene - - - -
AT1G29870.1 -0.77269 tRNA synthetase class II (G, H, P and S) family protein - - - -
AT5G02240.1 -0.771944 binding / catalytic/ coenzyme binding OMAT5P000520 - - -
AT3G46030.1 -0.770893 HTB11 - - - -

Get whole results

Over-Representation Analysis Result

p-value <= 2.30e-24:20 terms with high significance
2.30e-24 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0046907 intracellular transport 10/200 4.21 3.03e-05 - no
B 3 GO:0048856 anatomical structure development 22/200 2.46 3.45e-05 - no
B 3 GO:0009653 anatomical structure morphogenesis 12/200 3.57 3.78e-05 - no
B 3 GO:0051649 establishment of localization in cell 10/200 3.71 9.34e-05 - no
B 3 GO:0019222 regulation of metabolic process 25/200 2.12 1.29e-04 - no
B 3 GO:0006996 organelle organization 11/200 3.30 1.49e-04 - no
B 4 GO:0048513 organ development 13/200 2.94 1.61e-04 - no
B 4 GO:0048731 system development 13/200 2.93 1.63e-04 - no
B 3 GO:0051641 cellular localization 10/200 3.40 2.00e-04 6.86E-17 no
B 4 GO:0031323 regulation of cellular metabolic process 23/200 2.13 2.21e-04 - no
B 3 GO:0050789 regulation of biological process 32/200 1.85 2.42e-04 - no
B 3 GO:0050794 regulation of cellular process 29/200 1.90 2.88e-04 - no
B 5 GO:0006508 proteolysis 12/200 2.86 3.33e-04 - no
B 3 GO:0051707 response to other organism 10/200 2.99 5.97e-04 - no
B 3 GO:0006810 transport 21/200 2.05 6.37e-04 - no
B 3 GO:0051234 establishment of localization 21/200 2.04 6.62e-04 - no
B 3 GO:0033036 macromolecule localization 10/200 2.89 7.75e-04 - no
B 4 GO:0080090 regulation of primary metabolic process 21/200 1.99 9.09e-04 - no
B 3 GO:0007275 multicellular organismal development 21/200 1.98 1.02e-03 - no
B 3 GO:0009607 response to biotic stimulus 10/200 2.77 1.11e-03 - no
B 3 GO:0022414 reproductive process 14/200 2.32 1.15e-03 - no
B 4 GO:0009889 regulation of biosynthetic process 20/200 1.99 1.18e-03 - no
B 5 GO:0031326 regulation of cellular biosynthetic process 20/200 1.99 1.18e-03 - no
B 4 GO:0010033 response to organic substance 15/200 2.24 1.19e-03 - no
B 4 GO:0051171 regulation of nitrogen compound metabolic process 20/200 1.97 1.31e-03 - no
B 3 GO:0065008 regulation of biological quality 10/200 2.68 1.43e-03 - no
B 5 GO:0006350 transcription 20/200 1.96 1.44e-03 - no
B 4 GO:0060255 regulation of macromolecule metabolic process 21/200 1.92 1.49e-03 - no
B 5 GO:0010556 regulation of macromolecule biosynthetic process 19/200 1.93 2.18e-03 - no
B 5 GO:0010468 regulation of gene expression 20/200 1.88 2.41e-03 1.01E-15 no
B 5 GO:0051252 regulation of RNA metabolic process 12/200 2.30 2.45e-03 - no
B 5 GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 19/200 1.90 2.66e-03 - no
B 3 GO:0009628 response to abiotic stimulus 15/200 2.02 3.32e-03 - yes
B 5 GO:0032774 RNA biosynthetic process 12/200 2.19 3.65e-03 - no
B 3 GO:0003006 reproductive developmental process 12/200 2.18 3.82e-03 - no
B 3 GO:0009056 catabolic process 10/200 2.10 8.89e-03 - no
C 3 GO:0044424 intracellular part 75/200 1.47 6.18e-05 - no
C 4 GO:0044444 cytoplasmic part 56/200 1.61 6.33e-05 - no
C 3 GO:0005622 intracellular 77/200 1.45 8.59e-05 - no
C 4 GO:0043231 intracellular membrane-bounded organelle 65/200 1.48 2.04e-04 - no
C 3 GO:0043227 membrane-bounded organelle 65/200 1.48 2.05e-04 - no
C 4 GO:0005737 cytoplasm 57/200 1.52 2.67e-04 - no
C 3 GO:0043229 intracellular organelle 65/200 1.41 8.62e-04 - no
C 5 GO:0005829 cytosol 11/200 2.66 1.00e-03 - no
C 4 GO:0005886 plasma membrane 22/200 1.78 3.19e-03 - no
C 5 GO:0005634 nucleus 26/200 1.66 3.84e-03 - no
C 3 GO:0044464 cell part 108/200 1.18 7.86e-03 - no
C 3 GO:0016020 membrane 39/200 1.42 8.38e-03 1.96E-15 no
M 3 GO:0005515 protein binding 35/200 2.24 2.16e-06 0 no
M 5 GO:0016773 phosphotransferase activity, alcohol group as acceptor 17/200 2.74 5.71e-05 - no
M 4 GO:0003677 DNA binding 26/200 1.88 6.78e-04 0 no
M 5 GO:0016301 kinase activity 17/200 2.11 1.27e-03 - no
M 3 GO:0000166 nucleotide binding 23/200 1.74 3.40e-03 - no
M 5 GO:0032555 purine ribonucleotide binding 18/200 1.83 4.67e-03 - no
M 4 GO:0032553 ribonucleotide binding 18/200 1.83 4.67e-03 - no
M 4 GO:0016772 transferase activity, transferring phosphorus-containing groups 17/200 1.85 5.10e-03 - no
M 3 GO:0022892 substrate-specific transporter activity 11/200 2.13 6.07e-03 - no
M 4 GO:0017076 purine nucleotide binding 18/200 1.73 8.32e-03 - no
M 5 GO:0030554 adenyl nucleotide binding 16/200 1.77 9.66e-03 - no
M 4 GO:0001883 purine nucleoside binding 16/200 1.77 9.66e-03 - no
M 3 GO:0001882 nucleoside binding 16/200 1.76 9.90e-03 - no
PS 3 PO:0009013 meristem 159/200 1.98 8.42e-31 - yes
PS 4 PO:0020030 cotyledon 152/200 2.07 1.45e-30 - yes
PS 3 PO:0020091 male gametophyte 161/200 1.94 1.69e-30 - yes
PS 4 PO:0009047 stem 161/200 1.91 1.73e-29 - yes
PS 4 PO:0000230 inflorescence meristem 154/200 1.98 6.29e-29 - yes
PS 5 PO:0020039 leaf lamina 158/200 1.92 1.46e-28 - yes
PS 5 PO:0009028 microsporophyll 159/200 1.90 2.54e-28 - yes
PS 4 PO:0009025 leaf 165/200 1.79 2.02e-27 - yes
PS 3 PO:0009005 root 163/200 1.81 3.36e-27 - yes
PS 5 PO:0000013 cauline leaf 151/200 1.95 4.47e-27 - yes
PS 5 PO:0008037 seedling 161/200 1.82 7.62e-27 - yes
PS 5 PO:0020038 petiole 149/200 1.96 1.88e-26 - yes
PS 5 PO:0009027 megasporophyll 156/200 1.86 4.48e-26 - yes
PS 4 PO:0009026 sporophyll 160/200 1.78 5.23e-25 - yes
PS 5 PO:0009052 pedicel 151/200 1.86 2.30e-24 - yes
PS 4 PO:0000037 shoot apex 155/200 1.80 4.80e-24 - yes
PS 5 PO:0008034 leaf whorl 161/200 1.71 4.50e-23 - yes
PS 4 PO:0008033 phyllome whorl 161/200 1.71 4.50e-23 - yes
PS 3 PO:0009031 sepal 159/200 1.72 7.16e-23 - yes
PS 3 PO:0006001 phyllome 167/200 1.63 2.16e-22 - yes
PS 3 PO:0009032 petal 153/200 1.75 9.26e-22 - yes
PS 4 PO:0009009 embryo 161/200 1.67 1.03e-21 - yes
PS 3 PO:0009010 seed 161/200 1.65 4.99e-21 - yes
PS 4 PO:0009001 fruit 161/200 1.64 9.67e-21 - yes
PS 3 PO:0006342 infructescence 161/200 1.64 9.67e-21 - yes
PS 3 PO:0009006 shoot 169/200 1.56 2.07e-20 - yes
PS 4 PO:0009049 inflorescence 163/200 1.56 1.35e-18 - yes
PS 5 PO:0009046 flower 162/200 1.56 2.65e-18 - yes
PS 4 PO:0006345 pollen tube 71/200 2.44 3.89e-14 - yes
PS 3 PO:0000084 sperm cell 56/200 1.73 8.61e-06 - no
PS 3 PO:0020097 generative cell 56/200 1.73 8.61e-06 - no
PS 4 PO:0005679 epidermis 26/200 2.10 1.16e-04 - no
PS 3 PO:0009014 dermal tissue 26/200 2.10 1.17e-04 - no
PS 5 PO:0006016 leaf epidermis 23/200 2.07 3.32e-04 - no
PS 5 PO:0006035 shoot epidermis 23/200 2.05 3.67e-04 - no
PS 3 PO:0004013 epidermal cell 24/200 2.01 3.82e-04 - no
PS 5 PO:0000349 epidermal initial 23/200 2.04 4.06e-04 - no
PS 4 PO:0004011 initial cell 23/200 2.03 4.44e-04 - no
PS 3 PO:0004010 meristematic cell 23/200 2.02 4.54e-04 - no
PS 4 PO:0000293 guard cell 22/200 2.04 5.07e-04 - no
PS 4 PO:0000351 guard mother cell 22/200 2.04 5.39e-04 - no
PS 3 PO:0000070 meristemoid 22/200 2.03 5.51e-04 - no
PG 4 PO:0001054 4 leaf senescence stage 150/200 1.95 1.32e-26 - yes
PG 3 PO:0001050 leaf development stages 150/200 1.95 1.41e-26 - yes
PG 5 PO:0007133 leaf production 156/200 1.85 5.73e-26 - yes
PG 4 PO:0007112 1 main shoot growth 156/200 1.85 5.89e-26 - yes
PG 3 PO:0007134 A vegetative growth 156/200 1.84 1.40e-25 - yes
PG 5 PO:0004507 D bilateral stage 151/200 1.83 1.10e-23 - yes
PG 5 PO:0001081 F mature embryo stage 148/200 1.86 1.63e-23 - yes
PG 5 PO:0001078 E expanded cotyledon stage 151/200 1.82 2.73e-23 - yes
PG 4 PO:0007600 3 floral organ development stages 167/200 1.64 8.91e-23 - yes
PG 5 PO:0001185 C globular stage 149/200 1.82 1.38e-22 - yes
PG 4 PO:0007616 4 anthesis 162/200 1.67 3.51e-22 - yes
PG 5 PO:0007604 corolla developmental stages 162/200 1.64 3.51e-21 - yes
PG 3 PO:0007615 flower development stages 167/200 1.59 3.73e-21 - yes
PG 4 PO:0007631 embryo development stages 153/200 1.70 2.31e-20 - yes
PG 3 PO:0001170 seed development stages 153/200 1.69 3.85e-20 - yes
PG 5 PO:0007605 androecium developmental stages 74/200 2.53 1.22e-15 - yes
KW 0 ipr016024 - 13/200 7.04 6.16e-09 - no
KW 0 armadillo - 13/200 6.95 7.26e-09 - no
KW 0 golgi - 10/200 6.02 1.03e-06 - no
KW 0 helical - 13/200 4.31 2.38e-06 - no
KW 0 ubiquitin - 15/200 3.34 1.32e-05 - no
KW 0 mediated - 13/200 3.68 1.46e-05 - yes
KW 0 region - 31/200 2.15 1.85e-05 1.08E-15 no
KW 0 transcription - 29/200 2.00 1.23e-04 - no
KW 0 regulator - 10/200 3.42 1.90e-04 - no
KW 0 processes - 10/200 3.30 2.59e-04 - no
KW 0 ipr013083 - 10/200 3.19 3.43e-04 - no
KW 0 finger - 20/200 2.16 4.14e-04 - no
KW 0 nucleus - 25/200 1.94 5.26e-04 - no
KW 0 containing - 30/200 1.80 5.86e-04 0 no
KW 0 ligase - 11/200 2.82 6.07e-04 - no
KW 0 transport - 20/200 2.06 7.94e-04 - no
KW 0 motif - 12/200 2.47 1.30e-03 1.28E-16 no
KW 0 regulation - 24/200 1.82 1.65e-03 1.97E-15 no
KW 0 kinase - 20/200 1.89 2.15e-03 - no
KW 0 dependent - 23/200 1.72 4.06e-03 - no
KW 0 plasma - 20/200 1.74 5.56e-03 - no
KW 0 ipr011009 - 13/200 2.01 5.76e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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