|
Gene Model | |
|
| |
|
Correlation Plot | |
|
| |
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G01734.1 | 0.818222 | unknown protein | - | - | - | - |
| AT3G02560.1 | 0.809643 | 40S ribosomal protein S7 (RPS7B) | OMAT3P000710 | - | OMAT3P100680 | - |
| AT1G31000.1 | 0.807514 | F-box family protein | - | - | - | - |
| AT2G34450.2 | 0.795691 | high mobility group (HMG1/2) family protein | - | - | - | - |
| AT4G07770.1 | 0.79178 | transposable element gene | - | - | - | - |
| AT1G54355.1 | 0.789183 | other RNA | - | - | OMAT1P015120 | - |
| AT1G27240.1 | 0.785995 | paired amphipathic helix repeat-containing protein | - | - | - | - |
| AT1G34410.1 | 0.785555 | ARF21 (AUXIN RESPONSE FACTOR 21) | - | - | - | - |
| AT1G43502.1 | 0.777905 | transposable element gene | - | - | - | - |
| AT3G59980.1 | 0.769115 | tRNA-binding region domain-containing protein | OMAT3P114880 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G15350.1 | -0.759653 | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein | OMAT3P005560 | - | - | - |
| AT5G45810.1 | -0.714147 | CIPK19 (CBL-INTERACTING PROTEIN KINASE 19) | OMAT5P012850 | - | - | - |
| AT3G14067.1 | -0.708535 | subtilase family protein | OMAT3P104670 | - | - | - |
| AT5G01260.2 | -0.707812 | glycoside hydrolase starch-binding domain-containing protein | OMAT5P000100 | - | - | - |
| AT2G10014.1 | -0.69527 | unknown protein | - | - | - | - |
| AT3G42940.1 | -0.686052 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT1G75170.1 | -0.683301 | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | OMAT1P021950 | - | - | - |
| AT5G60360.3 | -0.671902 | AALP (Arabidopsis aleurain-like protease) | OMAT5P018380 | - | OMAT5P116140 | - |
| AT4G00890.1 | -0.668534 | proline-rich family protein | - | - | - | - |
| AT3G51250.1 | -0.666877 | senescence/dehydration-associated protein-related | OMAT3P013665,OMAT3P013675 | [OMAT3P013665]-, [OMAT3P013675]- | - | - |
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 |
:With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) |
Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0006412 | translation | 14/200 | 1.93 | 6.51e-03 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 10/200 | 2.87 | 8.31e-04 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 12/200 | 2.01 | 7.25e-03 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 12/200 | 2.01 | 7.25e-03 | - | no |
| KW | 0 | ribosomal | - | 11/200 | 3.64 | 5.80e-05 | - | no |
| KW | 0 | pseudogene | - | 22/200 | 2.13 | 2.81e-04 | - | no |
| KW | 0 | value | - | 31/200 | 1.85 | 3.10e-04 | - | yes |
| KW | 0 | transposable_element_gene | - | 37/200 | 1.58 | 1.82e-03 | - | yes |
| KW | 0 | transposable | - | 37/200 | 1.58 | 1.83e-03 | - | yes |
| KW | 0 | element | - | 37/200 | 1.55 | 2.54e-03 | - | yes |
| KW | 0 | gypsy | - | 12/200 | 2.25 | 2.92e-03 | - | no |
| KW | 0 | subunit | - | 15/200 | 2.05 | 3.00e-03 | - | no |
| KW | 0 | translation | - | 11/200 | 2.22 | 4.40e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |