AT4G24400.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT4G21540.1 0.866246 SPHK1 (SPHINGOSINE KINASE 1) OMAT4P006550,OMAT4P006560 [OMAT4P006550]-, [OMAT4P006560]- - -
AT2G47960.1 0.862399 unknown protein - - - -
AT2G05260.1 0.846489 lipase class 3 family protein OMAT2P001170 - - -
AT2G40110.1 0.845301 yippee family protein OMAT2P010660 - - -
AT1G45145.1 0.838524 ATTRX5 OMAT1P111340 - OMAT1P012770 -
AT5G25770.3 0.836781 unknown protein OMAT5P107700 - - -
AT4G08180.1 0.836272 ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C) OMAT4P002010 - - -
AT3G17410.1 0.831746 serine/threonine protein kinase, putative OMAT3P006530 - - -
AT2G34140.1 0.825393 Dof-type zinc finger domain-containing protein OMAT2P107530 - - -
AT5G04080.1 0.82446 unknown protein OMAT5P001220 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT3G52150.1 -0.807231 RNA recognition motif (RRM)-containing protein OMAT3P014090 - OMAT3P112220 -
AT3G55250.1 -0.786736 unknown protein OMAT3P015170 - - -
AT3G21580.1 -0.779544 cobalt ion transmembrane transporter - - - -
AT3G53560.1 -0.776456 chloroplast lumen common family protein OMAT3P112770 - - -
AT2G42130.4 -0.768323 unknown protein OMAT2P011420 - - -
AT5G11480.1 -0.763346 GTP binding OMAT5P103200 - - -
AT5G35601.1 -0.761549 pseudogene, cytoplasmic aconitate hydratase, similar to cytoplasmic aconitate hydratase - - - -
AT5G18430.1 -0.756623 GDSL-motif lipase/hydrolase family protein OMAT5P105370 - - -
AT1G31160.1 -0.756191 zinc-binding protein, putative / protein kinase C inhibitor, putative - - - -
AT3G03850.1 -0.750269 auxin-responsive protein, putative OMAT3P001260 - - -

Get whole results

Over-Representation Analysis Result

p-value <= 1.17e-18:20 terms with high significance
1.17e-18 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 3 GO:0023046 signaling process 12/200 3.70 2.60e-05 5.04E-17 no
B 3 GO:0023060 signal transmission 12/200 3.70 2.60e-05 - no
B 3 GO:0023033 signaling pathway 10/200 2.96 6.43e-04 2.02E-16 no
B 3 GO:0050794 regulation of cellular process 27/200 1.77 1.35e-03 - no
B 3 GO:0051716 cellular response to stimulus 11/200 2.49 1.75e-03 - no
B 4 GO:0009725 response to hormone stimulus 11/200 2.33 3.03e-03 - no
B 4 GO:0010033 response to organic substance 14/200 2.09 3.12e-03 - yes
B 5 GO:0006508 proteolysis 10/200 2.39 3.49e-03 - no
B 3 GO:0050789 regulation of biological process 28/200 1.62 4.16e-03 - no
B 4 GO:0006629 lipid metabolic process 10/200 2.30 4.58e-03 - no
B 3 GO:0009719 response to endogenous stimulus 11/200 2.13 5.96e-03 - no
B 3 GO:0009056 catabolic process 10/200 2.10 8.89e-03 - no
C 5 GO:0005773 vacuole 12/200 3.48 4.95e-05 - no
M 5 GO:0016301 kinase activity 17/200 2.11 1.27e-03 3.17E-12 yes
M 5 GO:0016773 phosphotransferase activity, alcohol group as acceptor 14/200 2.26 1.54e-03 - yes
M 4 GO:0016772 transferase activity, transferring phosphorus-containing groups 18/200 1.96 2.24e-03 - yes
M 3 GO:0016787 hydrolase activity 26/200 1.66 3.78e-03 - no
PS 4 PO:0009047 stem 159/200 1.88 5.61e-28 - yes
PS 3 PO:0009005 root 161/200 1.79 9.86e-26 1.43E-16 yes
PS 5 PO:0009028 microsporophyll 152/200 1.81 2.06e-23 - yes
PS 4 PO:0000230 inflorescence meristem 146/200 1.88 2.09e-23 - yes
PS 5 PO:0009027 megasporophyll 152/200 1.81 2.38e-23 - yes
PS 3 PO:0020091 male gametophyte 151/200 1.82 2.46e-23 - yes
PS 3 PO:0009013 meristem 148/200 1.84 5.23e-23 - yes
PS 4 PO:0009026 sporophyll 157/200 1.74 5.95e-23 - yes
PS 5 PO:0008037 seedling 154/200 1.74 4.99e-22 - yes
PS 3 PO:0009031 sepal 155/200 1.68 2.73e-20 - yes
PS 4 PO:0009025 leaf 154/200 1.67 6.60e-20 - yes
PS 4 PO:0009009 embryo 157/200 1.62 3.55e-19 - yes
PS 5 PO:0009046 flower 163/200 1.57 6.36e-19 - yes
PS 4 PO:0009001 fruit 158/200 1.61 7.33e-19 - yes
PS 3 PO:0006342 infructescence 158/200 1.61 7.33e-19 - yes
PS 4 PO:0009049 inflorescence 163/200 1.56 1.35e-18 - yes
PS 3 PO:0009010 seed 157/200 1.60 1.57e-18 - yes
PS 3 PO:0006001 phyllome 161/200 1.57 1.82e-18 - yes
PS 3 PO:0009006 shoot 165/200 1.52 8.08e-18 - yes
PS 4 PO:0020030 cotyledon 130/200 1.77 1.19e-16 - yes
PS 5 PO:0008034 leaf whorl 150/200 1.59 2.33e-16 - yes
PS 4 PO:0008033 phyllome whorl 150/200 1.59 2.33e-16 - yes
PS 5 PO:0009052 pedicel 135/200 1.66 4.48e-15 - yes
PS 5 PO:0000013 cauline leaf 129/200 1.67 3.60e-14 - yes
PS 3 PO:0009032 petal 139/200 1.59 5.77e-14 - yes
PS 5 PO:0020039 leaf lamina 131/200 1.59 1.19e-12 - yes
PS 4 PO:0000037 shoot apex 132/200 1.53 1.67e-11 - yes
PS 4 PO:0006345 pollen tube 63/200 2.16 3.24e-10 - no
PS 5 PO:0020038 petiole 114/200 1.50 1.84e-08 - yes
PS 3 PO:0000084 sperm cell 58/200 1.79 1.82e-06 - no
PS 3 PO:0020097 generative cell 58/200 1.79 1.82e-06 - no
PG 5 PO:0007133 leaf production 150/200 1.78 5.82e-22 - yes
PG 4 PO:0007112 1 main shoot growth 150/200 1.78 5.97e-22 - yes
PG 3 PO:0007134 A vegetative growth 150/200 1.77 1.32e-21 - yes
PG 4 PO:0007616 4 anthesis 161/200 1.66 1.62e-21 - yes
PG 5 PO:0007604 corolla developmental stages 158/200 1.60 1.17e-18 - yes
PG 3 PO:0007615 flower development stages 162/200 1.55 6.10e-18 - yes
PG 4 PO:0007600 3 floral organ development stages 158/200 1.55 4.99e-17 - yes
PG 5 PO:0001078 E expanded cotyledon stage 138/200 1.66 9.80e-16 - yes
PG 4 PO:0007631 embryo development stages 143/200 1.59 8.68e-15 - yes
PG 5 PO:0001185 C globular stage 135/200 1.65 1.05e-14 - yes
PG 3 PO:0001170 seed development stages 143/200 1.58 1.34e-14 - yes
PG 4 PO:0001054 4 leaf senescence stage 127/200 1.65 2.14e-13 - yes
PG 3 PO:0001050 leaf development stages 127/200 1.65 2.24e-13 - yes
PG 5 PO:0004507 D bilateral stage 132/200 1.60 3.95e-13 - yes
PG 5 PO:0001081 F mature embryo stage 127/200 1.60 3.55e-12 - yes
PG 5 PO:0007605 androecium developmental stages 63/200 2.15 4.02e-10 - no
KW 0 vacuole - 12/200 3.81 1.94e-05 - no
KW 0 transduction - 12/200 3.63 3.20e-05 6.98E-16 no
KW 0 signaling - 12/200 3.22 1.05e-04 7.06E-16 no
KW 0 signal - 13/200 2.96 1.48e-04 1.02E-15 no
KW 0 mediated - 11/200 3.11 2.52e-04 3.17E-12 no
KW 0 visible - 10/200 2.70 1.35e-03 - no
KW 0 kinase - 20/200 1.89 2.15e-03 0 yes
KW 0 transporter - 14/200 2.01 4.46e-03 1.55E-16 no
KW 0 cellular_component - 64/200 1.31 5.61e-03 - no
KW 0 ubiquitin - 10/200 2.23 5.81e-03 - no
KW 0 threonine - 14/200 1.87 8.71e-03 0 yes
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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