AT5G03910.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT2G30170.1 0.918897 catalytic OMAT2P106210 - - -
AT5G43470.1 0.91479 RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) OMAT5P110530 - - -
AT2G44920.2 0.912975 thylakoid lumenal 15 kDa protein, chloroplast OMAT2P012530 - - -
AT4G31030.1 0.907342 unknown protein OMAT4P108790 - - -
AT3G06483.1 0.907211 PDK (PYRUVATE DEHYDROGENASE KINASE) OMAT3P102250 - - -
AT4G33470.1 0.903008 hda14 (histone deacetylase 14) OMAT4P109675 - OMAT4P011290 -
AT1G64150.1 0.900515 unknown protein - - - -
AT4G37270.1 0.899531 HMA1 OMAT4P111220 - - -
AT5G58330.1 0.898025 malate dehydrogenase (NADP), chloroplast, putative OMAT5P115400 - OMAT5P017620,OMAT5P017630 [OMAT5P017620]-, [OMAT5P017630]-
AT5G59250.1 0.896681 sugar transporter family protein OMAT5P018000 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT4G28480.1 -0.896399 DNAJ heat shock family protein OMAT4P009250 - - -
AT4G29040.1 -0.880951 RPT2a (regulatory particle AAA-ATPase 2a) OMAT4P009520 - - -
AT3G22290.1 -0.87438 unknown protein OMAT3P008390 - - -
AT1G80970.1 -0.867255 XH domain-containing protein - - - -
AT3G08910.1 -0.843825 DNAJ heat shock protein, putative - - - -
AT5G18900.1 -0.837954 oxidoreductase, 2OG-Fe(II) oxygenase family protein OMAT5P105520 - - -
AT5G17430.1 -0.830467 BBM (BABY BOOM) - - - -
AT5G23540.1 -0.829794 26S proteasome regulatory subunit, putative OMAT5P008000 - - -
AT3G11440.1 -0.827402 MYB65 (MYB DOMAIN PROTEIN 65) - - - -
AT5G59910.1 -0.827295 HTB4 OMAT5P018270 - - -

Get whole results

Over-Representation Analysis Result

p-value <= 5.69e-48:20 terms with high significance
5.69e-48 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0015979 photosynthesis 35/200 43.76 1.04e-49 - no
B 4 GO:0006091 generation of precursor metabolites and energy 29/200 18.13 2.89e-29 - no
B 3 GO:0044237 cellular metabolic process 91/200 1.93 3.15e-12 - no
B 4 GO:0006461 protein complex assembly 11/200 11.09 4.06e-10 - no
B 3 GO:0070271 protein complex biogenesis 11/200 11.09 4.06e-10 - no
B 5 GO:0009416 response to light stimulus 17/200 5.91 8.42e-10 - no
B 4 GO:0009314 response to radiation 17/200 5.72 1.42e-09 - no
B 3 GO:0009628 response to abiotic stimulus 26/200 3.51 7.25e-09 - no
B 4 GO:0006952 defense response 20/200 4.39 7.35e-09 - no
B 4 GO:0065003 macromolecular complex assembly 11/200 7.72 2.44e-08 - no
B 3 GO:0006950 response to stress 34/200 2.74 2.48e-08 - no
B 3 GO:0022607 cellular component assembly 12/200 6.86 2.77e-08 - no
B 3 GO:0043933 macromolecular complex subunit organization 11/200 7.12 5.94e-08 - no
B 3 GO:0051707 response to other organism 14/200 4.18 1.63e-06 - no
B 5 GO:0043436 oxoacid metabolic process 16/200 3.63 2.42e-06 - no
B 4 GO:0006082 organic acid metabolic process 16/200 3.62 2.51e-06 - no
B 4 GO:0042180 cellular ketone metabolic process 16/200 3.57 3.11e-06 - no
B 3 GO:0009607 response to biotic stimulus 14/200 3.87 4.09e-06 - no
B 3 GO:0044281 small molecule metabolic process 23/200 2.56 1.23e-05 - no
B 4 GO:0044262 cellular carbohydrate metabolic process 11/200 3.56 7.26e-05 - no
B 4 GO:0005975 carbohydrate metabolic process 14/200 2.69 2.58e-04 - no
B 3 GO:0009056 catabolic process 13/200 2.73 3.43e-04 - no
B 3 GO:0050789 regulation of biological process 31/200 1.79 5.19e-04 - no
B 3 GO:0050794 regulation of cellular process 28/200 1.84 6.35e-04 - no
B 3 GO:0009791 post-embryonic development 13/200 2.20 2.66e-03 - no
B 4 GO:0048608 reproductive structure development 11/200 2.26 3.88e-03 - no
B 4 GO:0006629 lipid metabolic process 10/200 2.30 4.58e-03 - no
B 3 GO:0042221 response to chemical stimulus 20/200 1.75 5.25e-03 - no
B 3 GO:0022414 reproductive process 12/200 1.99 7.92e-03 - no
B 3 GO:0044238 primary metabolic process 64/200 1.29 8.30e-03 - no
B 3 GO:0003006 reproductive developmental process 11/200 2.00 9.82e-03 - no
C 5 GO:0009536 plastid 127/200 6.88 1.41e-81 3.64E-21 yes
C 4 GO:0044435 plastid part 83/200 14.59 1.17e-75 - yes
C 5 GO:0044434 chloroplast part 82/200 14.80 3.35e-75 - yes
C 4 GO:0044444 cytoplasmic part 141/200 4.06 6.76e-63 - yes
C 4 GO:0005737 cytoplasm 142/200 3.79 1.20e-59 - yes
C 4 GO:0009579 thylakoid 54/200 21.69 6.84e-58 - no
C 4 GO:0044436 thylakoid part 49/200 23.75 1.40e-54 - no
C 4 GO:0043231 intracellular membrane-bounded organelle 145/200 3.30 1.56e-53 - yes
C 3 GO:0043227 membrane-bounded organelle 145/200 3.30 1.59e-53 - yes
C 5 GO:0031976 plastid thylakoid 47/200 23.61 3.10e-52 - no
C 4 GO:0031984 organelle subcompartment 47/200 23.47 4.20e-52 - no
C 3 GO:0043229 intracellular organelle 145/200 3.14 1.13e-50 - yes
C 3 GO:0005622 intracellular 153/200 2.87 4.54e-50 - yes
C 3 GO:0044424 intracellular part 150/200 2.94 9.21e-50 - yes
C 4 GO:0034357 photosynthetic membrane 44/200 23.99 2.88e-49 - no
C 5 GO:0042651 thylakoid membrane 43/200 23.75 5.69e-48 - no
C 5 GO:0055035 plastid thylakoid membrane 42/200 24.25 2.78e-47 - no
C 3 GO:0044446 intracellular organelle part 83/200 5.79 3.36e-43 - yes
C 3 GO:0044422 organelle part 83/200 5.78 3.59e-43 - yes
C 5 GO:0009532 plastid stroma 38/200 15.37 5.33e-35 - no
C 3 GO:0044464 cell part 171/200 1.87 1.34e-32 - yes
C 5 GO:0009526 plastid envelope 37/200 13.46 6.10e-32 - yes
C 4 GO:0031967 organelle envelope 37/200 8.88 2.51e-25 - yes
C 3 GO:0031975 envelope 37/200 8.88 2.51e-25 - yes
C 3 GO:0016020 membrane 69/200 2.52 1.99e-14 - no
C 3 GO:0048046 apoplast 16/200 8.11 1.88e-11 - no
C 3 GO:0043234 protein complex 22/200 3.36 1.95e-07 - no
C 3 GO:0044425 membrane part 23/200 2.91 1.43e-06 - no
M 3 GO:0016853 isomerase activity 10/200 7.59 1.03e-07 - no
M 3 GO:0046906 tetrapyrrole binding 11/200 5.77 5.66e-07 - no
M 3 GO:0016491 oxidoreductase activity 23/200 2.73 4.29e-06 - no
M 5 GO:0032555 purine ribonucleotide binding 21/200 2.14 3.58e-04 - no
M 4 GO:0032553 ribonucleotide binding 21/200 2.14 3.58e-04 - no
M 3 GO:0016740 transferase activity 30/200 1.83 4.23e-04 - no
M 4 GO:0017076 purine nucleotide binding 21/200 2.02 7.54e-04 - no
M 5 GO:0030554 adenyl nucleotide binding 19/200 2.10 7.90e-04 - no
M 4 GO:0001883 purine nucleoside binding 19/200 2.10 7.90e-04 - no
M 3 GO:0001882 nucleoside binding 19/200 2.09 8.16e-04 - no
M 3 GO:0000166 nucleotide binding 24/200 1.82 1.62e-03 - no
M 4 GO:0016772 transferase activity, transferring phosphorus-containing groups 17/200 1.85 5.10e-03 - no
PS 4 PO:0020030 cotyledon 174/200 2.37 1.88e-50 - yes
PS 5 PO:0020038 petiole 176/200 2.31 4.49e-50 - yes
PS 3 PO:0009013 meristem 177/200 2.20 2.65e-47 - yes
PS 5 PO:0000013 cauline leaf 174/200 2.25 6.76e-47 - yes
PS 5 PO:0020039 leaf lamina 178/200 2.16 1.50e-46 - yes
PS 4 PO:0000230 inflorescence meristem 172/200 2.21 1.89e-44 - yes
PS 4 PO:0009047 stem 176/200 2.09 8.50e-43 - yes
PS 5 PO:0009028 microsporophyll 175/200 2.09 3.34e-42 - yes
PS 4 PO:0009025 leaf 181/200 1.97 7.40e-42 - yes
PS 5 PO:0008037 seedling 175/200 1.98 1.17e-38 - yes
PS 4 PO:0009026 sporophyll 175/200 1.94 2.56e-37 - yes
PS 5 PO:0008034 leaf whorl 177/200 1.88 5.13e-36 - yes
PS 4 PO:0008033 phyllome whorl 177/200 1.88 5.13e-36 - yes
PS 4 PO:0000037 shoot apex 169/200 1.96 7.74e-35 - yes
PS 3 PO:0006001 phyllome 181/200 1.76 5.50e-34 - yes
PS 4 PO:0009009 embryo 176/200 1.82 2.07e-33 - yes
PS 3 PO:0009032 petal 168/200 1.92 8.49e-33 - yes
PS 3 PO:0009010 seed 176/200 1.80 1.45e-32 - yes
PS 4 PO:0009001 fruit 176/200 1.79 3.26e-32 - yes
PS 3 PO:0006342 infructescence 176/200 1.79 3.26e-32 - yes
PS 3 PO:0009031 sepal 170/200 1.84 3.91e-31 - yes
PS 5 PO:0009052 pedicel 160/200 1.97 6.96e-31 - yes
PS 5 PO:0009027 megasporophyll 162/200 1.93 1.50e-30 - yes
PS 3 PO:0009006 shoot 181/200 1.67 6.03e-30 - yes
PS 5 PO:0009046 flower 177/200 1.70 2.72e-29 - yes
PS 4 PO:0009049 inflorescence 177/200 1.69 6.89e-29 - yes
PS 3 PO:0020091 male gametophyte 152/200 1.83 5.39e-24 - yes
PS 4 PO:0000293 guard cell 46/200 4.28 5.92e-18 - no
PS 4 PO:0000351 guard mother cell 46/200 4.26 7.04e-18 - no
PS 3 PO:0000070 meristemoid 46/200 4.25 7.52e-18 - no
PS 5 PO:0006016 leaf epidermis 46/200 4.14 2.14e-17 - no
PS 5 PO:0006035 shoot epidermis 46/200 4.11 2.81e-17 - no
PS 5 PO:0000349 epidermal initial 46/200 4.08 3.67e-17 - no
PS 4 PO:0004011 initial cell 46/200 4.05 4.70e-17 - no
PS 3 PO:0004010 meristematic cell 46/200 4.05 5.00e-17 - no
PS 3 PO:0004013 epidermal cell 46/200 3.86 3.15e-16 - no
PS 4 PO:0005679 epidermis 46/200 3.71 1.31e-15 - no
PS 3 PO:0009014 dermal tissue 46/200 3.71 1.34e-15 - no
PS 3 PO:0009005 root 128/200 1.42 2.04e-08 - yes
PG 4 PO:0001054 4 leaf senescence stage 174/200 2.26 3.35e-47 - yes
PG 3 PO:0001050 leaf development stages 174/200 2.26 3.66e-47 - yes
PG 5 PO:0007133 leaf production 177/200 2.10 4.95e-44 - yes
PG 4 PO:0007112 1 main shoot growth 177/200 2.10 5.12e-44 - yes
PG 3 PO:0007134 A vegetative growth 177/200 2.09 1.56e-43 - yes
PG 5 PO:0004507 D bilateral stage 165/200 2.00 3.66e-34 - yes
PG 5 PO:0001078 E expanded cotyledon stage 165/200 1.99 1.09e-33 - yes
PG 5 PO:0001185 C globular stage 164/200 2.00 1.45e-33 - yes
PG 5 PO:0001081 F mature embryo stage 161/200 2.02 5.53e-33 - yes
PG 5 PO:0007604 corolla developmental stages 176/200 1.78 5.94e-32 - yes
PG 4 PO:0007600 3 floral organ development stages 178/200 1.75 1.31e-31 - yes
PG 4 PO:0007616 4 anthesis 174/200 1.79 2.20e-31 - yes
PG 3 PO:0007615 flower development stages 178/200 1.70 1.03e-29 - yes
PG 4 PO:0007631 embryo development stages 166/200 1.84 1.82e-29 - yes
PG 3 PO:0001170 seed development stages 166/200 1.84 3.36e-29 - yes
KW 0 chloroplast - 111/200 6.28 1.16e-64 - yes
KW 0 thylakoid - 38/200 17.85 1.52e-37 - no
KW 0 components - 30/200 18.48 1.82e-30 - no
KW 0 photosystem - 21/200 34.92 2.07e-28 - no
KW 0 light - 28/200 10.49 1.56e-21 - no
KW 0 stroma - 20/200 10.73 3.58e-16 - no
KW 0 envelope - 18/200 7.88 2.19e-12 - yes
KW 0 response - 45/200 2.51 2.04e-09 - no
KW 0 encodes - 56/200 2.19 2.50e-09 - no
KW 0 defense - 18/200 5.16 2.79e-09 - no
KW 0 subunit - 26/200 3.55 5.80e-09 - no
KW 0 isomerase - 10/200 9.72 8.06e-09 - no
KW 0 phosphate - 16/200 5.28 1.29e-08 - no
KW 0 catalytic - 30/200 2.95 3.12e-08 - no
KW 0 class - 22/200 3.67 4.05e-08 - no
KW 0 localized - 12/200 5.82 1.87e-07 - no
KW 0 disease - 11/200 6.29 2.28e-07 - no
KW 0 membrane - 52/200 1.95 4.80e-07 - yes
KW 0 resistance - 13/200 4.57 1.22e-06 1.00E-45 no
KW 0 dependent - 30/200 2.24 1.09e-05 - no
KW 0 process - 40/200 1.95 1.19e-05 - no
KW 0 ipr016040 - 10/200 4.64 1.23e-05 - no
KW 0 electron - 13/200 3.65 1.58e-05 - no
KW 0 biosynthesis - 10/200 4.12 3.71e-05 - no
KW 0 dehydrogenase - 11/200 3.79 3.93e-05 - no
KW 0 complex - 21/200 2.48 4.40e-05 - no
KW 0 reductase - 10/200 3.67 1.03e-04 - no
KW 0 enzyme - 11/200 3.26 1.64e-04 - no
KW 0 atpase - 11/200 3.12 2.45e-04 0 yes
KW 0 biosynthetic - 17/200 2.38 3.24e-04 - no
KW 0 metabolic - 23/200 2.00 5.28e-04 - no
KW 0 stimulus - 11/200 2.55 1.41e-03 - no
KW 0 kinase - 20/200 1.89 2.15e-03 - no
KW 0 region - 25/200 1.73 2.63e-03 4.00E-122 yes
KW 0 putative - 34/200 1.47 8.00e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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