AT5G13180.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT3G27997.1 0.854362 pseudogene of unknown protein - - OMAT3P010490 -
AT5G27150.1 0.851594 NHX1 (NA+/H+ EXCHANGER) OMAT5P009190 - - -
AT1G63010.1 0.847505 SPX (SYG1/Pho81/XPR1) domain-containing protein OMAT1P115430 - - -
AT3G59700.1 0.829735 ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE) OMAT3P016790 - - -
AT3G49210.1 0.827622 unknown protein OMAT3P111330 - - -
AT3G47730.1 0.812074 ATATH1 OMAT3P110900 - - -
AT5G49525.1 0.808925 unknown protein OMAT5P112640 - - -
AT5G61010.1 0.799288 ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) OMAT5P018600 - - -
AT3G47780.1 0.790204 ATATH6 OMAT3P012390 - - -
AT1G73670.1 0.789781 ATMPK15 OMAT1P021340 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT5G56452.1 -0.814431 FUNCTIONS IN: molecular_function unknown - - - -
AT3G58260.1 -0.776483 meprin and TRAF homology domain-containing protein / MATH domain-containing protein - - - -
AT3G06000.1 -0.749697 leucine-rich repeat family protein - - - -
AT4G19560.1 -0.749444 CYCT1 - - - -
AT1G16430.1 -0.741064 surfeit locus protein 5 family protein / SURF5 family protein - - - -
AT4G06571.1 -0.74051 transposable element gene - - - -
AT5G29024.1 -0.737192 transposable element gene - - - -
AT1G47450.1 -0.735582 unknown protein - - - -
AT2G24110.1 -0.734679 40S ribosomal protein S11, expressed pseudogene, similar to GB:J05216 - - - -
AT1G45140.1 -0.731068 transposable element gene - - - -

Get whole results

Over-Representation Analysis Result

p-value <= 1.71e-17:20 terms with high significance
1.71e-17 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 3 GO:0006950 response to stress 26/200 2.10 1.19e-04 - no
B 3 GO:0009628 response to abiotic stimulus 18/200 2.43 1.76e-04 - no
B 3 GO:0006810 transport 21/200 2.05 6.37e-04 - no
B 3 GO:0051234 establishment of localization 21/200 2.04 6.62e-04 - no
B 4 GO:0010033 response to organic substance 15/200 2.24 1.19e-03 - no
B 3 GO:0042221 response to chemical stimulus 20/200 1.75 5.25e-03 - no
B 4 GO:0006952 defense response 10/200 2.20 6.39e-03 - no
B 3 GO:0009056 catabolic process 10/200 2.10 8.89e-03 - no
C 5 GO:0005773 vacuole 18/200 5.21 2.35e-09 - no
C 3 GO:0016020 membrane 45/200 1.64 2.42e-04 - no
C 4 GO:0005886 plasma membrane 25/200 2.02 2.85e-04 - no
C 3 GO:0044464 cell part 111/200 1.21 2.24e-03 - no
C 4 GO:0044444 cytoplasmic part 50/200 1.44 2.36e-03 - no
M 3 GO:0022857 transmembrane transporter activity 15/200 2.67 1.82e-04 - no
M 5 GO:0015075 ion transmembrane transporter activity 10/200 3.19 3.43e-04 - no
M 4 GO:0022891 substrate-specific transmembrane transporter activity 12/200 2.72 5.34e-04 - no
M 3 GO:0022892 substrate-specific transporter activity 12/200 2.32 2.22e-03 - no
M 5 GO:0016773 phosphotransferase activity, alcohol group as acceptor 12/200 1.93 9.97e-03 - no
PS 4 PO:0009047 stem 155/200 1.84 4.09e-25 - yes
PS 3 PO:0009005 root 160/200 1.78 5.09e-25 - yes
PS 5 PO:0009028 microsporophyll 154/200 1.84 9.40e-25 - yes
PS 4 PO:0009026 sporophyll 156/200 1.73 2.72e-22 - yes
PS 5 PO:0008037 seedling 153/200 1.73 2.16e-21 - yes
PS 4 PO:0009025 leaf 156/200 1.70 3.74e-21 4.19E-17 yes
PS 3 PO:0020091 male gametophyte 146/200 1.76 3.30e-20 - yes
PS 4 PO:0020030 cotyledon 136/200 1.85 6.00e-20 - yes
PS 3 PO:0009031 sepal 154/200 1.67 1.12e-19 - yes
PS 3 PO:0006001 phyllome 161/200 1.57 1.82e-18 - yes
PS 4 PO:0009001 fruit 157/200 1.60 2.92e-18 - yes
PS 3 PO:0006342 infructescence 157/200 1.60 2.92e-18 - yes
PS 3 PO:0009013 meristem 140/200 1.74 3.24e-18 2.00E-44 yes
PS 4 PO:0009009 embryo 155/200 1.60 5.51e-18 - yes
PS 5 PO:0009046 flower 161/200 1.55 1.07e-17 - yes
PS 4 PO:0000230 inflorescence meristem 136/200 1.75 1.71e-17 - yes
PS 4 PO:0009049 inflorescence 161/200 1.54 2.21e-17 - yes
PS 3 PO:0009010 seed 155/200 1.58 2.32e-17 - yes
PS 3 PO:0009006 shoot 164/200 1.51 3.29e-17 - yes
PS 5 PO:0009027 megasporophyll 139/200 1.66 9.19e-16 - yes
PS 5 PO:0000013 cauline leaf 130/200 1.68 1.19e-14 - yes
PS 5 PO:0008034 leaf whorl 144/200 1.53 2.64e-13 - yes
PS 4 PO:0008033 phyllome whorl 144/200 1.53 2.64e-13 - yes
PS 5 PO:0020039 leaf lamina 131/200 1.59 1.19e-12 - yes
PS 3 PO:0009032 petal 135/200 1.54 4.04e-12 - yes
PS 5 PO:0020038 petiole 118/200 1.55 6.17e-10 - yes
PS 4 PO:0000037 shoot apex 120/200 1.39 4.65e-07 - yes
PS 4 PO:0006345 pollen tube 52/200 1.78 7.40e-06 - no
PS 5 PO:0009052 pedicel 111/200 1.37 8.07e-06 - yes
PS 3 PO:0000084 sperm cell 50/200 1.54 5.13e-04 - no
PS 3 PO:0020097 generative cell 50/200 1.54 5.13e-04 - no
PG 3 PO:0007134 A vegetative growth 148/200 1.75 2.25e-20 - yes
PG 5 PO:0007133 leaf production 147/200 1.75 4.07e-20 - yes
PG 4 PO:0007112 1 main shoot growth 147/200 1.75 4.17e-20 - yes
PG 4 PO:0007616 4 anthesis 156/200 1.61 2.17e-18 - yes
PG 3 PO:0007615 flower development stages 160/200 1.53 9.32e-17 - yes
PG 4 PO:0007600 3 floral organ development stages 153/200 1.50 2.62e-14 - yes
PG 5 PO:0007604 corolla developmental stages 150/200 1.52 3.09e-14 - yes
PG 4 PO:0001054 4 leaf senescence stage 126/200 1.64 6.11e-13 - yes
PG 3 PO:0001050 leaf development stages 126/200 1.64 6.40e-13 - yes
PG 3 PO:0001170 seed development stages 131/200 1.45 2.38e-09 - yes
PG 4 PO:0007631 embryo development stages 130/200 1.44 4.04e-09 - yes
PG 5 PO:0001185 C globular stage 121/200 1.47 9.10e-09 - yes
PG 5 PO:0004507 D bilateral stage 112/200 1.36 8.57e-06 - yes
PG 5 PO:0007605 androecium developmental stages 52/200 1.78 8.59e-06 - no
PG 5 PO:0001081 F mature embryo stage 106/200 1.33 5.67e-05 - yes
PG 5 PO:0001078 E expanded cotyledon stage 107/200 1.29 2.36e-04 - yes
KW 0 vacuole - 18/200 5.71 5.25e-10 - no
KW 0 visible - 16/200 4.32 2.28e-07 - no
KW 0 major - 13/200 4.55 1.28e-06 - no
KW 0 leaves - 17/200 3.43 2.80e-06 9.21E-17 no
KW 0 membrane - 47/200 1.77 2.90e-05 - no
KW 0 plasma - 26/200 2.27 3.17e-05 - no
KW 0 conserved - 29/200 2.14 3.47e-05 - no
KW 0 response - 34/200 1.90 9.73e-05 - no
KW 0 member - 22/200 2.01 6.51e-04 - no
KW 0 lipid - 10/200 2.91 7.32e-04 - no
KW 0 anthesis - 24/200 1.83 1.52e-03 - no
KW 0 carbohydrate - 10/200 2.55 2.10e-03 - no
KW 0 ipr017441 - 10/200 2.33 4.17e-03 - no
KW 0 transport - 18/200 1.85 4.26e-03 - no
KW 0 encodes - 38/200 1.49 4.43e-03 - no
KW 0 transporter - 14/200 2.01 4.46e-03 - no
KW 0 transmembrane - 14/200 1.93 6.56e-03 - no
KW 0 class - 12/200 2.00 7.55e-03 - no
KW 0 active - 15/200 1.83 8.41e-03 1.35E-15 no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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