AT5G13840.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT5G47500.1 0.939155 pectinesterase family protein OMAT5P111920 - - -
AT1G70210.1 0.937011 CYCD1 OMAT1P019970 - - -
AT3G53190.1 0.935693 pectate lyase family protein OMAT3P014500 - - -
AT2G30370.1 0.933781 allergen-related OMAT2P106290 - - -
AT4G32830.1 0.93049 AtAUR1 (ATAURORA1) OMAT4P011040 - - -
AT2G26520.1 0.927938 unknown protein OMAT2P005730 - - -
AT4G14200.1 0.926539 unknown protein OMAT4P103170 - - -
AT3G61760.1 0.925494 ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B) - - - -
AT5G26850.1 0.921163 INVOLVED IN: biological_process unknown OMAT5P009130 - - -
AT4G16270.1 0.91965 peroxidase 40 (PER40) (P40) OMAT4P004740 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G41910.1 -0.71292 transposable element gene - - - -
AT3G45910.1 -0.695099 unknown protein - - - -
AT5G56075.1 -0.664994 ATP binding / nucleotide binding / phenylalanine-tRNA ligase - - - -
AT3G57090.1 -0.662474 BIGYIN OMAT3P015960 - - -
AT3G29450.1 -0.660147 FUNCTIONS IN: molecular_function unknown - - - -
AT2G10350.1 -0.652491 transposable element gene - - - -
AT1G35860.1 -0.651542 TOC75-I (translocon outer membrane complex 75-I) - - - -
AT4G04440.1 -0.649673 transposable element gene - - - -
AT5G29026.1 -0.649361 transposable element gene - - - -
AT4G03977.1 -0.646231 transposable element gene - - - -

Get whole results

Over-Representation Analysis Result

p-value <= 8.06e-13:20 terms with high significance
8.06e-13 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0006629 lipid metabolic process 14/200 3.22 3.56e-05 - no
B 3 GO:0023033 signaling pathway 11/200 3.25 1.67e-04 - no
B 3 GO:0007275 multicellular organismal development 20/200 1.88 2.32e-03 - no
B 5 GO:0006796 phosphate metabolic process 14/200 2.11 2.92e-03 - no
B 4 GO:0006793 phosphorus metabolic process 14/200 2.11 2.95e-03 - no
B 3 GO:0022414 reproductive process 13/200 2.16 3.12e-03 - no
B 3 GO:0009791 post-embryonic development 12/200 2.03 6.85e-03 - no
B 3 GO:0048856 anatomical structure development 16/200 1.79 8.75e-03 - no
C 5 GO:0005856 cytoskeleton 11/200 9.78 1.71e-09 - no
C 3 GO:0044464 cell part 132/200 1.44 2.43e-09 - yes
C 3 GO:0012505 endomembrane system 48/200 1.98 1.04e-06 - no
C 3 GO:0043234 protein complex 16/200 2.45 3.35e-04 - yes
M 3 GO:0016787 hydrolase activity 44/200 2.82 7.93e-11 - no
M 5 GO:0004091 carboxylesterase activity 13/200 6.49 1.72e-08 - no
M 4 GO:0016788 hydrolase activity, acting on ester bonds 19/200 3.20 2.48e-06 - no
M 5 GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 13/200 2.92 1.70e-04 - no
M 4 GO:0016817 hydrolase activity, acting on acid anhydrides 13/200 2.89 1.88e-04 - no
M 4 GO:0017076 purine nucleotide binding 21/200 2.02 7.54e-04 - no
M 5 GO:0030554 adenyl nucleotide binding 19/200 2.10 7.90e-04 - no
M 4 GO:0001883 purine nucleoside binding 19/200 2.10 7.90e-04 - no
M 3 GO:0001882 nucleoside binding 19/200 2.09 8.16e-04 - no
M 5 GO:0032555 purine ribonucleotide binding 20/200 2.04 8.85e-04 - no
M 4 GO:0032553 ribonucleotide binding 20/200 2.04 8.85e-04 - no
M 5 GO:0016773 phosphotransferase activity, alcohol group as acceptor 12/200 1.93 9.97e-03 - no
PS 5 PO:0009046 flower 170/200 1.63 1.11e-23 - yes
PS 4 PO:0009049 inflorescence 170/200 1.62 2.57e-23 - yes
PS 3 PO:0009006 shoot 173/200 1.59 2.85e-23 - yes
PS 3 PO:0009032 petal 154/200 1.76 2.11e-22 - yes
PS 3 PO:0006001 phyllome 167/200 1.63 2.16e-22 - yes
PS 5 PO:0008034 leaf whorl 159/200 1.69 9.76e-22 - yes
PS 4 PO:0008033 phyllome whorl 159/200 1.69 9.76e-22 - yes
PS 3 PO:0009031 sepal 155/200 1.68 2.73e-20 - yes
PS 3 PO:0020091 male gametophyte 116/200 1.40 8.47e-07 - no
PS 4 PO:0009026 sporophyll 122/200 1.36 1.90e-06 - yes
PS 3 PO:0009010 seed 129/200 1.32 3.11e-06 - yes
PS 5 PO:0009027 megasporophyll 115/200 1.37 3.48e-06 - yes
PS 4 PO:0009001 fruit 129/200 1.31 4.36e-06 - yes
PS 3 PO:0006342 infructescence 129/200 1.31 4.36e-06 - yes
PS 4 PO:0009009 embryo 123/200 1.27 6.55e-05 - yes
PS 4 PO:0006345 pollen tube 48/200 1.65 1.38e-04 - no
PS 4 PO:0009025 leaf 111/200 1.21 2.76e-03 - yes
PS 5 PO:0009052 pedicel 100/200 1.23 2.99e-03 - yes
PS 5 PO:0009028 microsporophyll 102/200 1.22 3.88e-03 - yes
PG 4 PO:0007600 3 floral organ development stages 169/200 1.66 3.21e-24 - yes
PG 4 PO:0007616 4 anthesis 163/200 1.68 7.32e-23 - yes
PG 3 PO:0007615 flower development stages 169/200 1.61 1.51e-22 - yes
PG 5 PO:0007604 corolla developmental stages 162/200 1.64 3.51e-21 - yes
PG 3 PO:0001170 seed development stages 127/200 1.40 6.54e-08 - yes
PG 4 PO:0007631 embryo development stages 126/200 1.40 1.05e-07 - yes
PG 5 PO:0007605 androecium developmental stages 52/200 1.78 8.59e-06 - no
PG 5 PO:0001185 C globular stage 110/200 1.34 2.44e-05 - yes
PG 5 PO:0001078 E expanded cotyledon stage 108/200 1.30 1.37e-04 - yes
PG 5 PO:0001081 F mature embryo stage 99/200 1.24 2.09e-03 - yes
PG 5 PO:0004507 D bilateral stage 101/200 1.23 3.11e-03 - yes
KW 0 anthesis - 64/200 4.87 3.10e-28 - no
KW 0 petal - 65/200 4.46 1.71e-26 - no
KW 0 expansion - 64/200 4.35 1.64e-25 - no
KW 0 differentiation - 63/200 4.17 4.68e-24 - no
KW 0 stage - 70/200 3.62 2.86e-23 - no
KW 0 whorl - 21/200 8.98 2.94e-15 - no
KW 0 flower - 33/200 4.32 2.63e-13 - no
KW 0 sepal - 18/200 8.34 8.06e-13 - no
KW 0 ipr001087 - 11/200 16.33 4.19e-12 - no
KW 0 mature - 33/200 3.69 2.01e-11 - no
KW 0 germinated - 24/200 4.34 3.74e-10 - no
KW 0 microtubule - 11/200 10.70 6.13e-10 - no
KW 0 pollen - 29/200 3.25 6.16e-09 - no
KW 0 lipase - 11/200 7.95 1.75e-08 - no
KW 0 allergen - 10/200 8.80 2.28e-08 - no
KW 0 storage - 10/200 8.80 2.28e-08 - no
KW 0 globular - 17/200 4.53 5.13e-08 - no
KW 0 lipid - 16/200 4.66 7.82e-08 - no
KW 0 system - 49/200 2.02 3.90e-07 - no
KW 0 endomembrane - 48/200 2.03 4.65e-07 - no
KW 0 hydrolase - 22/200 3.02 1.27e-06 - no
KW 0 active - 23/200 2.81 2.59e-06 - no
KW 0 metabolic - 28/200 2.44 4.21e-06 - no
KW 0 specific - 13/200 3.81 9.94e-06 9.00E-15 no
KW 0 expanded - 14/200 3.21 3.73e-05 - no
KW 0 member - 25/200 2.28 3.99e-05 - no
KW 0 inhibitor - 11/200 3.68 5.27e-05 - no
KW 0 acting - 10/200 3.71 9.34e-05 - no
KW 0 region - 29/200 2.01 1.12e-04 - yes
KW 0 gametophyte - 12/200 3.06 1.78e-04 - no
KW 0 electron - 11/200 3.09 2.68e-04 - no
KW 0 process - 36/200 1.76 2.84e-04 - no
KW 0 cotyledon - 14/200 2.66 2.88e-04 - no
KW 0 encodes - 41/200 1.61 7.38e-04 - no
KW 0 carrier - 11/200 2.74 7.70e-04 - no
KW 0 phosphorylation - 13/200 2.12 3.72e-03 - no
KW 0 complex - 16/200 1.89 5.17e-03 - yes
KW 0 catalytic - 18/200 1.77 6.72e-03 - no
KW 0 alpha - 14/200 1.92 6.85e-03 - no
KW 0 serine - 16/200 1.80 8.42e-03 - no
KW 0 associated - 13/200 1.90 9.12e-03 2.00E-06 no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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