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Gene Model | |
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Correlation Plot | |
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| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT1G35260.1 | 0.989679 | MLP165 (MLP-LIKE PROTEIN 165) | OMAT1P110790 | - | OMAT1P012110 | - |
| AT1G67710.1 | 0.987852 | ARR11 (RESPONSE REGULATOR 11) | OMAT1P116810 | - | - | - |
| AT5G07322.1 | 0.986366 | other RNA | OMAT5P101990 | - | - | - |
| AT2G30840.1 | 0.982124 | 2-oxoglutarate-dependent dioxygenase, putative | OMAT2P106450 | - | - | - |
| AT1G22230.1 | 0.981719 | unknown protein | OMAT1P008100 | - | OMAT1P107135 | - |
| AT2G16980.2 | 0.981403 | tetracycline transporter | - | - | - | - |
| AT3G04530.1 | 0.981269 | PPCK2 | OMAT3P001530 | - | - | - |
| AT3G47200.1 | 0.980097 | unknown protein | OMAT3P110750 | - | - | - |
| AT5G23840.1 | 0.977783 | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein | OMAT5P008090 | - | - | - |
| AT1G34315.1 | 0.977164 | unknown protein | OMAT1P110680 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G18460.1 | -0.676547 | unknown protein | - | - | - | - |
| AT1G20750.1 | -0.668167 | helicase-related | - | - | - | - |
| AT5G54770.1 | -0.666789 | THI1 | OMAT5P016150 | - | OMAT5P114270 | - |
| AT2G06780.1 | -0.663505 | transposable element gene | - | - | - | - |
| AT2G42130.4 | -0.661149 | unknown protein | OMAT2P011420 | - | - | - |
| AT1G73060.1 | -0.646539 | unknown protein | - | - | - | - |
| AT4G13880.1 | -0.63963 | AtRLP48 (Receptor Like Protein 48) | - | - | - | - |
| AT2G12190.1 | -0.636573 | cytochrome P450, putative | - | - | - | - |
| AT3G42900.1 | -0.633657 | transposable element gene | - | - | - | - |
| AT5G29028.1 | -0.604547 | transposable element gene | - | - | - | - |
| p-value | <= 6.51e-07 | :20 terms with high significance | |
| 6.51e-07 < | p-value | <= 8.76e-06 |
:With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) |
Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0006952 | defense response | 16/200 | 3.51 | 3.78e-06 | - | no |
| B | 3 | GO:0006950 | response to stress | 27/200 | 2.18 | 4.71e-05 | - | no |
| B | 3 | GO:0009607 | response to biotic stimulus | 10/200 | 2.77 | 1.11e-03 | - | no |
| B | 3 | GO:0006810 | transport | 18/200 | 1.76 | 7.31e-03 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 18/200 | 1.75 | 7.53e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 54/200 | 2.22 | 3.25e-09 | - | no |
| C | 3 | GO:0044464 | cell part | 114/200 | 1.25 | 5.41e-04 | - | no |
| M | 4 | GO:0020037 | heme binding | 12/200 | 6.86 | 2.77e-08 | - | no |
| M | 3 | GO:0046906 | tetrapyrrole binding | 12/200 | 6.29 | 7.54e-08 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 26/200 | 3.08 | 1.02e-07 | - | no |
| M | 3 | GO:0019825 | oxygen binding | 10/200 | 7.20 | 1.76e-07 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 30/200 | 2.21 | 1.41e-05 | - | no |
| M | 4 | GO:0043169 | cation binding | 31/200 | 2.16 | 1.66e-05 | - | no |
| M | 3 | GO:0043167 | ion binding | 31/200 | 2.16 | 1.66e-05 | 7.00E-18 | no |
| PS | 3 | PO:0009005 | root | 158/200 | 1.76 | 1.23e-23 | - | yes |
| KW | 0 | hypocotyl | - | 36/200 | 15.43 | 2.75e-33 | - | no |
| KW | 0 | petal | - | 43/200 | 2.95 | 3.12e-11 | - | yes |
| KW | 0 | differentiation | - | 43/200 | 2.84 | 9.85e-11 | - | yes |
| KW | 0 | system | - | 56/200 | 2.31 | 3.51e-10 | 2.91E-15 | no |
| KW | 0 | expansion | - | 41/200 | 2.79 | 5.04e-10 | - | yes |
| KW | 0 | stage | - | 48/200 | 2.48 | 8.13e-10 | - | yes |
| KW | 0 | endomembrane | - | 54/200 | 2.28 | 1.21e-09 | - | no |
| KW | 0 | anthesis | - | 36/200 | 2.74 | 9.77e-09 | - | no |
| KW | 0 | defense | - | 16/200 | 4.59 | 9.77e-08 | - | no |
| KW | 0 | electron | - | 16/200 | 4.49 | 1.31e-07 | - | no |
| KW | 0 | ipr017973 | - | 10/200 | 7.32 | 1.47e-07 | - | no |
| KW | 0 | ipr017972 | - | 10/200 | 7.32 | 1.47e-07 | - | no |
| KW | 0 | ipr001128 | - | 10/200 | 6.62 | 4.03e-07 | - | no |
| KW | 0 | oxygen | - | 12/200 | 5.21 | 6.51e-07 | - | no |
| KW | 0 | carrier | - | 16/200 | 3.99 | 6.87e-07 | - | no |
| KW | 0 | monooxygenase | - | 10/200 | 5.85 | 1.35e-06 | - | no |
| KW | 0 | response | - | 38/200 | 2.12 | 2.95e-06 | - | no |
| KW | 0 | putative | - | 44/200 | 1.91 | 7.98e-06 | - | no |
| KW | 0 | meristem | - | 10/200 | 4.36 | 2.18e-05 | - | no |
| KW | 0 | visible | - | 13/200 | 3.51 | 2.44e-05 | - | no |
| KW | 0 | active | - | 21/200 | 2.57 | 2.65e-05 | - | yes |
| KW | 0 | metabolic | - | 26/200 | 2.26 | 3.29e-05 | - | no |
| KW | 0 | cytochrome | - | 10/200 | 4.10 | 3.88e-05 | - | no |
| KW | 0 | conserved | - | 28/200 | 2.07 | 8.65e-05 | - | no |
| KW | 0 | oxidase | - | 10/200 | 3.64 | 1.11e-04 | - | no |
| KW | 0 | class | - | 16/200 | 2.67 | 1.20e-04 | - | no |
| KW | 0 | stimulus | - | 13/200 | 3.02 | 1.21e-04 | - | no |
| KW | 0 | region | - | 28/200 | 1.94 | 2.61e-04 | - | no |
| KW | 0 | integral | - | 11/200 | 3.08 | 2.72e-04 | - | no |
| KW | 0 | transmembrane | - | 17/200 | 2.34 | 3.91e-04 | - | no |
| KW | 0 | leaves | - | 13/200 | 2.63 | 4.95e-04 | - | no |
| KW | 0 | serine | - | 19/200 | 2.13 | 6.59e-04 | 3.00E-20 | yes |
| KW | 0 | flower | - | 17/200 | 2.23 | 7.06e-04 | - | yes |
| KW | 0 | ipr017442 | - | 13/200 | 2.47 | 9.06e-04 | - | yes |
| KW | 0 | receptor | - | 12/200 | 2.52 | 1.07e-03 | 2.27E-15 | yes |
| KW | 0 | process | - | 33/200 | 1.61 | 2.21e-03 | - | no |
| KW | 0 | oxidoreductase | - | 11/200 | 2.36 | 2.70e-03 | - | no |
| KW | 0 | group | - | 12/200 | 2.23 | 3.15e-03 | - | no |
| KW | 0 | ipr008271 | - | 11/200 | 2.25 | 3.92e-03 | - | yes |
| KW | 0 | glycosyl | - | 10/200 | 2.35 | 3.96e-03 | - | no |
| KW | 0 | ipr017441 | - | 10/200 | 2.33 | 4.17e-03 | - | no |
| KW | 0 | ipr000719 | - | 13/200 | 2.09 | 4.19e-03 | - | yes |
| KW | 0 | related | - | 41/200 | 1.46 | 4.55e-03 | 4.00E-21 | yes |
| KW | 0 | ipr011009 | - | 13/200 | 2.01 | 5.76e-03 | - | yes |
| KW | 0 | cotyledon | - | 11/200 | 2.09 | 6.98e-03 | - | no |
| KW | 0 | member | - | 19/200 | 1.73 | 7.04e-03 | 2.05E-16 | yes |
| KW | 0 | threonine | - | 14/200 | 1.87 | 8.71e-03 | 3.00E-20 | yes |
| KW | 0 | phosphorylation | - | 12/200 | 1.95 | 9.24e-03 | 5.50E-16 | yes |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |