OMAT1P000090http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100000900000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P016760 | 0.991973 | - | AT5G56369 | Encodes a defensin-like (DEFL) family protein. | - | - |
| OMAT3P107710 | 0.990927 | - | AT3G23167 | LCR39 (Low-molecular-weight cysteine-rich 39) | - | - |
| OMAT2P107710 | 0.990545 | - | AT2G34700 | pollen Ole e 1 allergen and extensin family protein | - | - |
| OMAT5P104450 | 0.990102 | - | AT5G15740 | unknown protein | - | - |
| OMAT1P013420 | 0.99002 | - | AT1G48910 | YUC10 | - | - |
| OMAT3P108210 | 0.989884 | - | AT3G25160 | ER lumen protein retaining receptor family protein | - | - |
| OMAT3P000740 | 0.988503 | - | AT3G02610 | acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding | - | - |
| OMAT4P001190 | 0.988424 | - | AT4G03050 | AOP3 | - | - |
| OMAT2P108790 | 0.987737 | - | AT2G37460 | nodulin MtN21 family protein | - | - |
| OMAT1P108440 | 0.98759 | - | AT1G27040 | nitrate transporter, putative | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P102990 | -0.667221 | - | AT1G09620 | ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding | - | - |
| OMAT5P103400 | -0.659401 | - | AT5G12120 | ubiquitin-associated (UBA)/TS-N domain-containing protein | - | - |
| OMAT3P111655 | -0.643517 | - | AT3G50370 | unknown protein | - | - |
| OMAT1P121530 | -0.624619 | - | AT1G80930 | MIF4G domain-containing protein / MA3 domain-containing protein | - | - |
| OMAT5P019760 | -0.618637 | - | AT5G64300 | ATGCH | - | - |
| OMAT5P111590 | -0.615499 | - | AT5G46190 | KH domain-containing protein | - | - |
| OMAT5P101150 | -0.61326 | - | AT5G04710 | aspartyl aminopeptidase, putative | - | - |
| OMAT3P111120 | -0.607708 | - | AT3G48560 | CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) | - | - |
| OMAT5P116940 | -0.607631 | - | AT5G62650 | unknown protein | - | - |
| OMAT3P105825 | -0.602198 | - | AT3G17240 | mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.38e-07 | :20 terms with high significance | |
| 1.38e-07 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0006629 | lipid metabolic process | 24/200 | 5.52 | 2.28e-12 | - | no |
| B | 5 | GO:0006633 | fatty acid biosynthetic process | 11/200 | 15.12 | 1.06e-11 | - | no |
| B | 4 | GO:0008610 | lipid biosynthetic process | 17/200 | 7.74 | 1.07e-11 | - | no |
| B | 4 | GO:0044255 | cellular lipid metabolic process | 17/200 | 6.32 | 2.89e-10 | - | no |
| B | 5 | GO:0016053 | organic acid biosynthetic process | 15/200 | 6.93 | 7.12e-10 | - | no |
| B | 5 | GO:0006631 | fatty acid metabolic process | 11/200 | 9.63 | 2.05e-09 | - | no |
| B | 4 | GO:0044283 | small molecule biosynthetic process | 20/200 | 4.40 | 7.02e-09 | - | no |
| B | 3 | GO:0019748 | secondary metabolic process | 14/200 | 6.05 | 1.44e-08 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 18/200 | 4.09 | 1.12e-07 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 18/200 | 4.08 | 1.16e-07 | - | no |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 18/200 | 4.01 | 1.49e-07 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 26/200 | 2.89 | 3.58e-07 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 14/200 | 2.69 | 2.58e-04 | - | no |
| B | 4 | GO:0044249 | cellular biosynthetic process | 42/200 | 1.49 | 2.71e-03 | - | no |
| B | 3 | GO:0009058 | biosynthetic process | 43/200 | 1.48 | 2.97e-03 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 66/200 | 1.33 | 3.41e-03 | - | no |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 11/200 | 2.10 | 6.63e-03 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 11/200 | 2.01 | 9.43e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 73/200 | 3.00 | 1.36e-19 | - | no |
| C | 3 | GO:0044464 | cell part | 130/200 | 1.42 | 1.34e-08 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 31/200 | 3.68 | 8.89e-11 | - | no |
| M | 4 | GO:0043169 | cation binding | 33/200 | 2.30 | 2.35e-06 | - | no |
| M | 3 | GO:0043167 | ion binding | 33/200 | 2.30 | 2.35e-06 | - | no |
| M | 5 | GO:0004091 | carboxylesterase activity | 10/200 | 4.99 | 6.22e-06 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 30/200 | 2.21 | 1.41e-05 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 19/200 | 1.88 | 2.88e-03 | - | no |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 12/200 | 2.02 | 7.08e-03 | - | no |
| KW | 0 | system | - | 73/200 | 3.01 | 1.16e-19 | - | no |
| KW | 0 | endomembrane | - | 72/200 | 3.05 | 1.24e-19 | - | no |
| KW | 0 | stage | - | 48/200 | 2.48 | 8.13e-10 | - | no |
| KW | 0 | anthesis | - | 38/200 | 2.89 | 8.19e-10 | - | no |
| KW | 0 | process | - | 49/200 | 2.39 | 1.78e-09 | - | no |
| KW | 0 | fatty | - | 11/200 | 8.28 | 1.12e-08 | - | no |
| KW | 0 | carrier | - | 17/200 | 4.24 | 1.38e-07 | - | no |
| KW | 0 | petal | - | 36/200 | 2.47 | 1.42e-07 | - | no |
| KW | 0 | expansion | - | 36/200 | 2.45 | 1.71e-07 | - | no |
| KW | 0 | biosynthetic | - | 23/200 | 3.22 | 2.37e-07 | - | no |
| KW | 0 | differentiation | - | 36/200 | 2.38 | 3.44e-07 | - | no |
| KW | 0 | metabolic | - | 30/200 | 2.61 | 4.62e-07 | - | no |
| KW | 0 | inhibitor | - | 13/200 | 4.35 | 2.17e-06 | - | no |
| KW | 0 | synthase | - | 15/200 | 3.42 | 9.94e-06 | - | no |
| KW | 0 | lipid | - | 12/200 | 3.49 | 4.69e-05 | - | no |
| KW | 0 | oxidoreductase | - | 14/200 | 3.00 | 7.76e-05 | - | no |
| KW | 0 | groups | - | 11/200 | 3.37 | 1.21e-04 | - | no |
| KW | 0 | transferring | - | 11/200 | 3.30 | 1.46e-04 | - | no |
| KW | 0 | encodes | - | 42/200 | 1.65 | 3.84e-04 | - | no |
| KW | 0 | globular | - | 11/200 | 2.93 | 4.30e-04 | - | no |
| KW | 0 | leaves | - | 13/200 | 2.63 | 4.95e-04 | - | no |
| KW | 0 | putative | - | 38/200 | 1.65 | 7.17e-04 | - | no |
| KW | 0 | electron | - | 10/200 | 2.81 | 9.80e-04 | - | no |
| KW | 0 | catalytic | - | 20/200 | 1.97 | 1.36e-03 | - | no |
| KW | 0 | flower | - | 16/200 | 2.09 | 1.82e-03 | - | no |
| KW | 0 | hydrolase | - | 15/200 | 2.06 | 2.86e-03 | - | no |
| KW | 0 | transferase | - | 13/200 | 2.12 | 3.66e-03 | - | no |
| KW | 0 | glycosyl | - | 10/200 | 2.35 | 3.96e-03 | - | no |
| KW | 0 | alpha | - | 14/200 | 1.92 | 6.85e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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