OMAT1P004000http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100040000000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P016800 | 0.929109 | - | AT1G61790 | OST3/OST6 family protein | - | - |
| OMAT1P020440 | 0.908925 | - | AT1G71270 | POK (POKY POLLEN TUBE) | - | - |
| OMAT4P106530 | 0.908581 | - | AT4G24330 | unknown protein | - | - |
| OMAT3P002540 | 0.894404 | - | AT3G07140 | GPI transamidase component Gpi16 subunit family protein | - | - |
| OMAT3P015790 | 0.891738 | - | AT3G56640 | exocyst complex subunit Sec15-like family protein | - | - |
| OMAT4P003930 | 0.890055 | - | AT4G14570 | acylaminoacyl-peptidase-related | - | - |
| OMAT4P107840 | 0.887622 | - | AT4G28100 | unknown protein | - | - |
| OMAT1P003710 | 0.881458 | - | AT1G10950 | endomembrane protein 70, putative | - | - |
| OMAT3P109170 | 0.87919 | - | AT3G27906 | unknown protein | - | - |
| OMAT1P021190 | 0.878957 | - | AT1G73100 | SUVH3 (SU(VAR)3-9 HOMOLOG 3) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P112260 | -0.852924 | - | AT3G52220 | unknown protein | - | - |
| OMAT3P012310 | -0.846625 | - | AT3G47550 | zinc finger (C3HC4-type RING finger) family protein | - | - |
| OMAT4P002930 | -0.838178 | - | AT4G11570 | haloacid dehalogenase-like hydrolase family protein | - | - |
| OMAT3P104660 | -0.825192 | - | AT3G14050 | RSH2 (RELA-SPOT HOMOLOG 2) | - | - |
| OMAT3P004400 | -0.818875 | - | - | - | AT3G12580 | HSP70 (heat shock protein 70) |
| OMAT1P014080 | -0.817549 | - | AT1G51090 | heavy-metal-associated domain-containing protein | - | - |
| OMAT1P100170 | -0.81417 | - | AT1G01470 | LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) | - | - |
| OMAT1P002870 | -0.810832 | - | AT1G08570 | ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4) | - | - |
| OMAT4P012700 | -0.810278 | - | AT4G36900 | RAP2.10 (related to AP2 10) | - | - |
| OMAT5P113600 | -0.805469 | - | AT5G52570 | BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.03e-35 | :20 terms with high significance | |
| 2.03e-35 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0010038 | response to metal ion | 13/200 | 5.42 | 1.60e-07 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 25/200 | 2.78 | 1.22e-06 | - | yes |
| B | 4 | GO:0010035 | response to inorganic substance | 13/200 | 4.56 | 1.25e-06 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 70/200 | 1.48 | 9.86e-05 | - | no |
| B | 3 | GO:0048869 | cellular developmental process | 10/200 | 3.60 | 1.22e-04 | - | no |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 11/200 | 3.27 | 1.59e-04 | - | no |
| B | 4 | GO:0019538 | protein metabolic process | 40/200 | 1.73 | 1.79e-04 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 14/200 | 2.69 | 2.58e-04 | - | no |
| B | 4 | GO:0044262 | cellular carbohydrate metabolic process | 10/200 | 3.23 | 3.06e-04 | - | no |
| B | 3 | GO:0065008 | regulation of biological quality | 11/200 | 2.95 | 4.12e-04 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 70/200 | 1.41 | 4.51e-04 | - | yes |
| B | 5 | GO:0044267 | cellular protein metabolic process | 35/200 | 1.72 | 5.35e-04 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 11/200 | 2.50 | 1.69e-03 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 11/200 | 2.49 | 1.73e-03 | - | no |
| B | 5 | GO:0006464 | protein modification process | 20/200 | 1.92 | 1.83e-03 | - | no |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 11/200 | 2.45 | 1.98e-03 | - | no |
| B | 4 | GO:0044283 | small molecule biosynthetic process | 11/200 | 2.42 | 2.18e-03 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 21/200 | 1.85 | 2.31e-03 | - | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 21/200 | 1.84 | 2.47e-03 | - | no |
| C | 3 | GO:0016020 | membrane | 76/200 | 2.77 | 1.93e-18 | 3.64E-21 | yes |
| C | 4 | GO:0005737 | cytoplasm | 90/200 | 2.40 | 3.91e-18 | - | yes |
| C | 4 | GO:0005886 | plasma membrane | 49/200 | 3.96 | 1.06e-17 | 3.64E-21 | yes |
| C | 4 | GO:0044444 | cytoplasmic part | 85/200 | 2.45 | 1.96e-17 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 101/200 | 1.98 | 8.63e-15 | - | yes |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 92/200 | 2.09 | 1.19e-14 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 92/200 | 2.09 | 1.20e-14 | - | yes |
| C | 3 | GO:0005622 | intracellular | 103/200 | 1.94 | 1.92e-14 | - | yes |
| C | 3 | GO:0043229 | intracellular organelle | 92/200 | 1.99 | 2.78e-13 | - | yes |
| C | 3 | GO:0044464 | cell part | 141/200 | 1.54 | 3.78e-13 | - | yes |
| C | 5 | GO:0005783 | endoplasmic reticulum | 18/200 | 7.94 | 1.90e-12 | 3.64E-21 | yes |
| C | 5 | GO:0005739 | mitochondrion | 29/200 | 4.53 | 2.16e-12 | - | no |
| C | 3 | GO:0031090 | organelle membrane | 18/200 | 6.17 | 1.44e-10 | - | no |
| C | 4 | GO:0031966 | mitochondrial membrane | 11/200 | 9.83 | 1.61e-09 | - | no |
| C | 4 | GO:0044429 | mitochondrial part | 12/200 | 8.60 | 1.85e-09 | - | no |
| C | 5 | GO:0005740 | mitochondrial envelope | 11/200 | 9.19 | 3.46e-09 | - | no |
| C | 4 | GO:0019866 | organelle inner membrane | 11/200 | 8.67 | 6.69e-09 | - | no |
| C | 5 | GO:0005743 | mitochondrial inner membrane | 10/200 | 9.90 | 6.70e-09 | - | no |
| C | 5 | GO:0005794 | Golgi apparatus | 11/200 | 8.39 | 9.64e-09 | - | no |
| C | 3 | GO:0044425 | membrane part | 26/200 | 3.29 | 2.80e-08 | - | no |
| C | 4 | GO:0005618 | cell wall | 15/200 | 4.52 | 2.74e-07 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 35/200 | 2.44 | 2.76e-07 | - | no |
| C | 3 | GO:0044422 | organelle part | 35/200 | 2.44 | 2.81e-07 | - | no |
| C | 3 | GO:0030312 | external encapsulating structure | 15/200 | 4.49 | 3.01e-07 | - | no |
| C | 3 | GO:0043234 | protein complex | 21/200 | 3.21 | 7.70e-07 | - | no |
| C | 5 | GO:0005730 | nucleolus | 10/200 | 5.83 | 1.40e-06 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 12/200 | 4.42 | 3.94e-06 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 12/200 | 4.41 | 4.04e-06 | - | no |
| C | 4 | GO:0031967 | organelle envelope | 14/200 | 3.36 | 2.19e-05 | - | no |
| C | 3 | GO:0031975 | envelope | 14/200 | 3.36 | 2.19e-05 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 10/200 | 4.14 | 3.55e-05 | - | no |
| C | 5 | GO:0005773 | vacuole | 12/200 | 3.48 | 4.95e-05 | - | no |
| C | 4 | GO:0044428 | nuclear part | 11/200 | 3.31 | 1.44e-04 | - | no |
| C | 5 | GO:0009536 | plastid | 32/200 | 1.73 | 7.66e-04 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 12/200 | 2.24 | 3.06e-03 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 12/200 | 2.01 | 7.25e-03 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 12/200 | 2.01 | 7.25e-03 | - | no |
| M | 4 | GO:0016757 | transferase activity, transferring glycosyl groups | 10/200 | 3.43 | 1.86e-04 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 26/200 | 1.92 | 4.99e-04 | - | no |
| M | 4 | GO:0043169 | cation binding | 27/200 | 1.88 | 5.38e-04 | - | no |
| M | 3 | GO:0043167 | ion binding | 27/200 | 1.88 | 5.38e-04 | 0 | no |
| M | 3 | GO:0016740 | transferase activity | 28/200 | 1.71 | 1.84e-03 | - | no |
| M | 5 | GO:0032555 | purine ribonucleotide binding | 19/200 | 1.94 | 2.09e-03 | - | no |
| M | 4 | GO:0032553 | ribonucleotide binding | 19/200 | 1.94 | 2.09e-03 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 23/200 | 1.74 | 3.40e-03 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 19/200 | 1.83 | 3.93e-03 | - | no |
| PS | 5 | PO:0020038 | petiole | 170/200 | 2.23 | 7.62e-44 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 173/200 | 2.13 | 2.46e-42 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 173/200 | 2.10 | 2.11e-41 | - | yes |
| PS | 3 | PO:0009013 | meristem | 170/200 | 2.12 | 3.09e-40 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 167/200 | 2.16 | 5.10e-40 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 174/200 | 2.02 | 1.93e-39 | - | yes |
| PS | 4 | PO:0009025 | leaf | 177/200 | 1.92 | 9.10e-38 | 4.19E-17 | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 164/200 | 2.11 | 5.84e-37 | - | yes |
| PS | 5 | PO:0008037 | seedling | 173/200 | 1.96 | 9.21e-37 | 1.25E-17 | yes |
| PS | 3 | PO:0009005 | root | 174/200 | 1.93 | 2.17e-36 | - | yes |
| PS | 3 | PO:0009032 | petal | 172/200 | 1.96 | 2.57e-36 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 168/200 | 2.00 | 1.53e-35 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 157/200 | 2.14 | 1.75e-34 | - | yes |
| PS | 3 | PO:0009031 | sepal | 173/200 | 1.87 | 9.97e-34 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 173/200 | 1.83 | 2.34e-32 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 173/200 | 1.83 | 2.34e-32 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 179/200 | 1.75 | 4.45e-32 | - | yes |
| PS | 4 | PO:0009009 | embryo | 174/200 | 1.80 | 1.27e-31 | 0 | yes |
| PS | 4 | PO:0009026 | sporophyll | 168/200 | 1.87 | 4.07e-31 | - | yes |
| PS | 3 | PO:0009010 | seed | 174/200 | 1.78 | 8.46e-31 | 3.72E-17 | yes |
| PS | 5 | PO:0009028 | microsporophyll | 162/200 | 1.93 | 1.27e-30 | - | yes |
| PS | 4 | PO:0009001 | fruit | 174/200 | 1.77 | 1.87e-30 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 174/200 | 1.77 | 1.87e-30 | - | yes |
| PS | 4 | PO:0009047 | stem | 162/200 | 1.92 | 2.89e-30 | - | yes |
| PS | 3 | PO:0009006 | shoot | 179/200 | 1.65 | 3.83e-28 | - | yes |
| PS | 5 | PO:0009046 | flower | 174/200 | 1.67 | 9.00e-27 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 156/200 | 1.88 | 9.31e-27 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 174/200 | 1.66 | 2.20e-26 | - | yes |
| PS | 4 | PO:0000293 | guard cell | 53/200 | 4.93 | 1.78e-23 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 53/200 | 4.90 | 2.19e-23 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 53/200 | 4.90 | 2.37e-23 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 53/200 | 4.77 | 8.25e-23 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 53/200 | 4.73 | 1.14e-22 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 53/200 | 4.70 | 1.57e-22 | - | no |
| PS | 4 | PO:0004011 | initial cell | 53/200 | 4.67 | 2.11e-22 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 53/200 | 4.66 | 2.28e-22 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 53/200 | 4.44 | 2.06e-21 | - | no |
| PS | 4 | PO:0005679 | epidermis | 53/200 | 4.28 | 1.14e-20 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 53/200 | 4.28 | 1.17e-20 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 61/200 | 1.88 | 1.49e-07 | - | no |
| PS | 3 | PO:0020097 | generative cell | 61/200 | 1.88 | 1.49e-07 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 47/200 | 1.61 | 2.69e-04 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 173/200 | 2.17 | 7.76e-44 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 173/200 | 2.10 | 1.91e-41 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 173/200 | 2.08 | 6.32e-41 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 171/200 | 2.08 | 8.81e-40 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 165/200 | 2.15 | 1.76e-38 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 165/200 | 2.14 | 1.91e-38 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 175/200 | 1.93 | 5.50e-37 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 173/200 | 1.92 | 2.03e-35 | 3.27E-20 | yes |
| PG | 5 | PO:0007133 | leaf production | 166/200 | 1.97 | 1.08e-33 | 4.07E-18 | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 166/200 | 1.97 | 1.11e-33 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 166/200 | 1.96 | 2.97e-33 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 173/200 | 1.78 | 1.60e-30 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 176/200 | 1.73 | 7.91e-30 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 173/200 | 1.75 | 2.35e-29 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 176/200 | 1.68 | 5.53e-28 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 56/200 | 1.91 | 3.19e-07 | - | no |
| KW | 0 | membrane | - | 70/200 | 2.63 | 1.29e-15 | 3.64E-21 | yes |
| KW | 0 | plasma | - | 42/200 | 3.66 | 4.11e-14 | 3.64E-21 | yes |
| KW | 0 | subunit | - | 29/200 | 3.96 | 6.13e-11 | 4.21E-16 | no |
| KW | 0 | reticulum | - | 16/200 | 7.21 | 1.18e-10 | 3.64E-21 | yes |
| KW | 0 | endoplasmic | - | 16/200 | 7.19 | 1.23e-10 | 3.64E-21 | yes |
| KW | 0 | mitochondrial | - | 16/200 | 7.09 | 1.51e-10 | - | no |
| KW | 0 | mitochondrion | - | 23/200 | 4.19 | 1.63e-09 | - | no |
| KW | 0 | golgi | - | 12/200 | 7.23 | 1.49e-08 | - | no |
| KW | 0 | cadmium | - | 11/200 | 6.60 | 1.34e-07 | - | no |
| KW | 0 | complex | - | 25/200 | 2.95 | 4.02e-07 | - | no |
| KW | 0 | chain | - | 14/200 | 4.63 | 4.58e-07 | - | no |
| KW | 0 | phosphate | - | 13/200 | 4.29 | 2.55e-06 | - | no |
| KW | 0 | putative | - | 43/200 | 1.86 | 1.81e-05 | 2.87E-16 | yes |
| KW | 0 | catalytic | - | 23/200 | 2.26 | 8.70e-05 | - | no |
| KW | 0 | process | - | 36/200 | 1.76 | 2.84e-04 | - | yes |
| KW | 0 | vacuole | - | 10/200 | 3.17 | 3.60e-04 | - | no |
| KW | 0 | transferase | - | 15/200 | 2.45 | 4.81e-04 | - | no |
| KW | 0 | nucleotide | - | 14/200 | 2.20 | 1.95e-03 | - | no |
| KW | 0 | biosynthetic | - | 15/200 | 2.10 | 2.33e-03 | 6.61E-17 | yes |
| KW | 0 | amino | - | 17/200 | 1.97 | 2.66e-03 | 1.80E-15 | no |
| KW | 0 | stress | - | 11/200 | 2.34 | 2.84e-03 | 7.86E-16 | no |
| KW | 0 | conserved | - | 23/200 | 1.70 | 4.63e-03 | 3.05E-16 | yes |
| KW | 0 | function | - | 25/200 | 1.60 | 7.10e-03 | 2.46E-15 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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