OMAT1P102950http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u101029500000i
Other supporting information
| Gene Model | |
 | |
| Correlation Plot | |
 | |
Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P019520 | 0.915965 | - | AT1G69010 | BIM2 (BES1-interacting Myc-like protein 2) | - | - |
| OMAT4P111900 | 0.915712 | - | AT4G38980 | unknown protein | - | - |
| OMAT4P104960 | 0.913558 | - | AT4G19400 | actin binding | - | - |
| OMAT4P005420 | 0.909008 | - | AT4G18160 | KCO6 | - | - |
| OMAT1P106260 | 0.908392 | - | AT1G19490 | bZIP transcription factor family protein | - | - |
| OMAT1P000730 | 0.908064 | - | AT1G02750,AT1G02760 | [AT1G02750]zinc ion binding, [AT1G02760]pre-tRNA | - | - |
| OMAT5P103930 | 0.908023 | - | AT5G13970 | unknown protein | - | - |
| OMAT5P006250 | 0.906849 | - | AT5G18100 | CSD3 (copper/zinc superoxide dismutase 3) | - | - |
| OMAT5P114130 | 0.906655 | - | AT5G54300 | unknown protein | - | - |
| OMAT5P106460 | 0.906636 | - | AT5G22290 | anac089 (Arabidopsis NAC domain containing protein 89) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P013690 | -0.841569 | - | AT2G47490 | mitochondrial substrate carrier family protein | - | - |
| OMAT5P020270 | -0.839512 | - | AT5G65620 | peptidase M3 family protein / thimet oligopeptidase family protein | - | - |
| OMAT5P004020 | -0.810139 | - | AT5G11740 | AGP15 (ARABINOGALACTAN PROTEIN 15) | - | - |
| OMAT2P110720 | -0.795306 | - | AT2G42230 | tubulin-specific chaperone C-related | - | - |
| OMAT4P102330 | -0.794924 | - | AT4G11680 | zinc finger (C3HC4-type RING finger) family protein | - | - |
| OMAT5P002910 | -0.79191 | - | AT5G08390 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT4P013390 | -0.784591 | - | AT4G38460 | GGR (geranylgeranyl reductase) | - | - |
| OMAT5P017200 | -0.77877 | - | AT5G57460 | unknown protein | - | - |
| OMAT5P001090 | -0.773691 | - | AT5G03650 | SBE2.2 (starch branching enzyme 2.2) | - | - |
| OMAT5P003290 | -0.77305 | - | AT5G09870 | CESA5 (CELLULOSE SYNTHASE 5) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.28e-12 | :20 terms with high significance | |
| 1.28e-12 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 17/200 | 3.25 | 5.92e-06 | - | no |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 25/200 | 2.54 | 6.41e-06 | - | no |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 25/200 | 2.49 | 9.01e-06 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 25/200 | 2.49 | 9.01e-06 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 17/200 | 3.10 | 1.12e-05 | - | no |
| B | 5 | GO:0006350 | transcription | 25/200 | 2.45 | 1.19e-05 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 25/200 | 2.37 | 2.04e-05 | - | no |
| B | 5 | GO:0010468 | regulation of gene expression | 25/200 | 2.35 | 2.50e-05 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 24/200 | 2.39 | 2.54e-05 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 24/200 | 2.37 | 3.00e-05 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 25/200 | 2.31 | 3.20e-05 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 25/200 | 2.28 | 3.92e-05 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 30/200 | 2.00 | 9.62e-05 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 30/200 | 1.97 | 1.26e-04 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 25/200 | 2.12 | 1.29e-04 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 32/200 | 1.90 | 1.53e-04 | - | no |
| B | 3 | GO:0050789 | regulation of biological process | 32/200 | 1.85 | 2.42e-04 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 19/200 | 2.23 | 3.66e-04 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 34/200 | 1.75 | 4.59e-04 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 34/200 | 1.71 | 6.54e-04 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 52/200 | 1.48 | 1.10e-03 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 15/200 | 2.24 | 1.19e-03 | - | no |
| B | 4 | GO:0044249 | cellular biosynthetic process | 43/200 | 1.53 | 1.53e-03 | - | no |
| B | 3 | GO:0009058 | biosynthetic process | 44/200 | 1.51 | 1.69e-03 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 64/200 | 1.35 | 2.60e-03 | - | no |
| B | 5 | GO:0034645 | cellular macromolecule biosynthetic process | 34/200 | 1.58 | 2.76e-03 | - | no |
| B | 4 | GO:0009059 | macromolecule biosynthetic process | 34/200 | 1.57 | 2.90e-03 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 53/200 | 1.37 | 5.16e-03 | - | no |
| B | 4 | GO:0010467 | gene expression | 31/200 | 1.52 | 6.76e-03 | - | no |
| C | 5 | GO:0005634 | nucleus | 33/200 | 2.11 | 1.43e-05 | - | no |
| C | 3 | GO:0005622 | intracellular | 74/200 | 1.39 | 4.71e-04 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 69/200 | 1.35 | 1.70e-03 | - | yes |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 60/200 | 1.37 | 3.03e-03 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 60/200 | 1.37 | 3.04e-03 | - | yes |
| C | 3 | GO:0043229 | intracellular organelle | 62/200 | 1.34 | 3.86e-03 | - | yes |
| M | 3 | GO:0005515 | protein binding | 37/200 | 2.36 | 2.80e-07 | - | yes |
| M | 3 | GO:0003700 | transcription factor activity | 25/200 | 2.48 | 9.90e-06 | - | no |
| M | 4 | GO:0003677 | DNA binding | 30/200 | 2.17 | 2.09e-05 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 42/200 | 1.77 | 7.51e-05 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 24/200 | 1.77 | 2.35e-03 | - | yes |
| M | 4 | GO:0043169 | cation binding | 24/200 | 1.67 | 4.89e-03 | - | yes |
| M | 3 | GO:0043167 | ion binding | 24/200 | 1.67 | 4.89e-03 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 140/200 | 1.67 | 2.46e-16 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 140/200 | 1.67 | 2.78e-16 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 127/200 | 1.73 | 3.95e-15 | - | yes |
| PS | 4 | PO:0009047 | stem | 138/200 | 1.64 | 4.70e-15 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 131/200 | 1.69 | 6.47e-15 | - | yes |
| PS | 3 | PO:0009005 | root | 143/200 | 1.59 | 8.07e-15 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 143/200 | 1.59 | 8.23e-15 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 137/200 | 1.59 | 9.30e-14 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 132/200 | 1.62 | 1.26e-13 | - | yes |
| PS | 3 | PO:0009013 | meristem | 131/200 | 1.63 | 1.29e-13 | - | yes |
| PS | 3 | PO:0009031 | sepal | 142/200 | 1.54 | 3.17e-13 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 143/200 | 1.52 | 7.79e-13 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 143/200 | 1.52 | 7.79e-13 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 125/200 | 1.62 | 2.44e-12 | - | yes |
| PS | 3 | PO:0009032 | petal | 135/200 | 1.54 | 4.04e-12 | - | yes |
| PS | 4 | PO:0009025 | leaf | 139/200 | 1.51 | 4.93e-12 | - | yes |
| PS | 5 | PO:0008037 | seedling | 135/200 | 1.53 | 7.52e-12 | - | yes |
| PS | 4 | PO:0009009 | embryo | 143/200 | 1.48 | 7.74e-12 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 148/200 | 1.44 | 1.30e-11 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 70/200 | 2.16 | 2.44e-11 | - | yes |
| PS | 3 | PO:0020097 | generative cell | 70/200 | 2.16 | 2.44e-11 | - | yes |
| PS | 3 | PO:0009010 | seed | 143/200 | 1.46 | 2.45e-11 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 128/200 | 1.54 | 3.90e-11 | - | yes |
| PS | 4 | PO:0009001 | fruit | 143/200 | 1.45 | 3.95e-11 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 143/200 | 1.45 | 3.95e-11 | - | yes |
| PS | 5 | PO:0009046 | flower | 148/200 | 1.42 | 5.17e-11 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 148/200 | 1.41 | 9.14e-11 | - | yes |
| PS | 3 | PO:0009006 | shoot | 151/200 | 1.39 | 1.55e-10 | - | yes |
| PS | 5 | PO:0020038 | petiole | 119/200 | 1.56 | 2.51e-10 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 125/200 | 1.52 | 3.95e-10 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 48/200 | 1.65 | 1.38e-04 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 135/200 | 1.64 | 1.50e-14 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 137/200 | 1.62 | 2.18e-14 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 136/200 | 1.62 | 3.45e-14 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 136/200 | 1.62 | 3.51e-14 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 133/200 | 1.60 | 2.68e-13 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 131/200 | 1.60 | 8.04e-13 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 128/200 | 1.61 | 1.28e-12 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 149/200 | 1.46 | 2.38e-12 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 144/200 | 1.48 | 3.86e-12 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 137/200 | 1.52 | 5.81e-12 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 137/200 | 1.51 | 8.53e-12 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 144/200 | 1.46 | 2.07e-11 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 149/200 | 1.42 | 3.59e-11 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 121/200 | 1.57 | 8.47e-11 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 121/200 | 1.57 | 8.83e-11 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 55/200 | 1.88 | 7.53e-07 | - | no |
| KW | 0 | ipr013083 | - | 16/200 | 5.11 | 2.09e-08 | - | no |
| KW | 0 | ipr001841 | - | 15/200 | 4.89 | 9.44e-08 | - | no |
| KW | 0 | finger | - | 25/200 | 2.70 | 2.07e-06 | 3.00E-12 | yes |
| KW | 0 | ubiquitin | - | 16/200 | 3.56 | 3.17e-06 | - | no |
| KW | 0 | ligase | - | 14/200 | 3.59 | 1.02e-05 | - | no |
| KW | 0 | factor | - | 35/200 | 2.00 | 2.57e-05 | - | no |
| KW | 0 | nucleus | - | 28/200 | 2.17 | 3.68e-05 | - | no |
| KW | 0 | transcription | - | 30/200 | 2.07 | 5.13e-05 | - | no |
| KW | 0 | regulation | - | 27/200 | 2.04 | 1.40e-04 | - | no |
| KW | 0 | dependent | - | 26/200 | 1.94 | 4.06e-04 | - | no |
| KW | 0 | containing | - | 30/200 | 1.80 | 5.86e-04 | 3.00E-12 | no |
| KW | 0 | ipr001810 | - | 11/200 | 2.71 | 8.64e-04 | - | no |
| KW | 0 | cyclin | - | 12/200 | 2.57 | 9.12e-04 | - | no |
| KW | 0 | motif | - | 11/200 | 2.26 | 3.77e-03 | - | no |
| KW | 0 | biological_process | - | 75/200 | 1.25 | 8.35e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
Top Page
