OMAT2P105940http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u201059400000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P017180 | 0.949608 | - | - | - | AT1G62750 | SCO1 (SNOWY COTYLEDON 1) |
| OMAT5P106730 | 0.936137 | - | AT5G23060 | CaS (Calcium sensing receptor) | - | - |
| OMAT1P118580 | 0.921692 | - | AT1G73110 | ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative | - | - |
| OMAT2P103500 | 0.916088 | - | AT2G21330 | fructose-bisphosphate aldolase, putative | - | - |
| OMAT5P109960 | 0.915115 | - | AT5G42070 | unknown protein | - | - |
| OMAT1P116610 | 0.913022 | - | AT1G66970 | SVL2 (SHV3-LIKE 2) | - | - |
| OMAT1P005770 | 0.906954 | - | AT1G15980 | NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) | - | - |
| OMAT1P116630 | 0.905155 | - | AT1G66980 | protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein | - | - |
| OMAT3P109520 | 0.904517 | - | AT3G29185 | unknown protein | - | - |
| OMAT3P107370 | 0.902858 | - | AT3G22210 | unknown protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P109290 | -0.795871 | - | AT5G39410 | binding / catalytic | - | - |
| OMAT4P009650 | -0.77965 | - | AT4G29330 | DER1 (DERLIN-1) | - | - |
| OMAT3P008390 | -0.769284 | - | AT3G22290 | unknown protein | - | - |
| OMAT2P005600 | -0.7679 | - | AT2G26230 | uricase / urate oxidase / nodulin 35, putative | - | - |
| OMAT2P010505 | -0.763254 | - | AT2G39725 | complex 1 family protein / LVR family protein | - | - |
| OMAT1P015740 | -0.762116 | - | AT1G56290 | CwfJ-like family protein | - | - |
| OMAT4P002220 | -0.754662 | - | AT4G09030 | AGP10 (ARABINOGALACTAN PROTEIN 10) | - | - |
| OMAT5P020710 | -0.752068 | - | AT5G66760 | SDH1-1 | - | - |
| OMAT1P110040 | -0.752012 | - | AT1G31830 | amino acid permease family protein | - | - |
| OMAT2P009530 | -0.742918 | - | AT2G37110 | unknown protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 9.96e-51 | :20 terms with high significance | |
| 9.96e-51 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0015979 | photosynthesis | 22/200 | 27.50 | 4.65e-27 | - | no |
| B | 4 | GO:0006091 | generation of precursor metabolites and energy | 18/200 | 11.25 | 3.69e-15 | - | no |
| B | 4 | GO:0051186 | cofactor metabolic process | 16/200 | 10.77 | 2.01e-13 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 89/200 | 1.88 | 2.39e-11 | - | no |
| B | 3 | GO:0042440 | pigment metabolic process | 10/200 | 14.09 | 1.54e-10 | - | no |
| B | 5 | GO:0051188 | cofactor biosynthetic process | 11/200 | 11.72 | 2.12e-10 | - | no |
| B | 3 | GO:0055114 | oxidation reduction | 11/200 | 11.02 | 4.36e-10 | - | no |
| B | 5 | GO:0018130 | heterocycle biosynthetic process | 10/200 | 11.71 | 1.13e-09 | - | no |
| B | 4 | GO:0006952 | defense response | 18/200 | 3.95 | 1.87e-07 | - | no |
| B | 4 | GO:0044282 | small molecule catabolic process | 10/200 | 6.76 | 3.30e-07 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 26/200 | 2.89 | 3.58e-07 | - | no |
| B | 4 | GO:0006066 | alcohol metabolic process | 10/200 | 6.42 | 5.49e-07 | - | no |
| B | 4 | GO:0046483 | heterocycle metabolic process | 13/200 | 4.80 | 6.78e-07 | - | no |
| B | 5 | GO:0044271 | cellular nitrogen compound biosynthetic process | 12/200 | 4.53 | 3.01e-06 | - | no |
| B | 4 | GO:0044262 | cellular carbohydrate metabolic process | 13/200 | 4.21 | 3.20e-06 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 21/200 | 2.83 | 5.73e-06 | - | no |
| B | 3 | GO:0006950 | response to stress | 29/200 | 2.34 | 6.55e-06 | - | no |
| B | 3 | GO:0009056 | catabolic process | 16/200 | 3.35 | 6.95e-06 | - | no |
| B | 5 | GO:0009416 | response to light stimulus | 12/200 | 4.17 | 7.36e-06 | - | no |
| B | 4 | GO:0009314 | response to radiation | 12/200 | 4.04 | 1.04e-05 | - | no |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 15/200 | 3.34 | 1.30e-05 | - | no |
| B | 3 | GO:0009607 | response to biotic stimulus | 13/200 | 3.60 | 1.86e-05 | - | no |
| B | 3 | GO:0051707 | response to other organism | 12/200 | 3.58 | 3.64e-05 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 14/200 | 3.18 | 4.10e-05 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 14/200 | 3.17 | 4.22e-05 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 34/200 | 1.75 | 4.59e-04 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 34/200 | 1.71 | 6.54e-04 | - | no |
| B | 4 | GO:0006519 | cellular amino acid and derivative metabolic process | 10/200 | 2.88 | 8.08e-04 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 13/200 | 2.50 | 8.12e-04 | - | no |
| C | 5 | GO:0009536 | plastid | 138/200 | 7.47 | 5.14e-96 | - | no |
| C | 4 | GO:0044435 | plastid part | 91/200 | 15.99 | 2.03e-87 | - | no |
| C | 5 | GO:0044434 | chloroplast part | 90/200 | 16.25 | 5.40e-87 | - | no |
| C | 4 | GO:0009579 | thylakoid | 65/200 | 26.11 | 1.53e-75 | - | no |
| C | 4 | GO:0044436 | thylakoid part | 59/200 | 28.60 | 6.04e-71 | - | no |
| C | 5 | GO:0042651 | thylakoid membrane | 55/200 | 30.38 | 1.17e-67 | - | no |
| C | 4 | GO:0034357 | photosynthetic membrane | 55/200 | 29.98 | 2.60e-67 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 145/200 | 4.18 | 2.78e-67 | - | no |
| C | 5 | GO:0031976 | plastid thylakoid | 56/200 | 28.13 | 7.53e-67 | - | no |
| C | 4 | GO:0031984 | organelle subcompartment | 56/200 | 27.96 | 1.09e-66 | - | no |
| C | 5 | GO:0055035 | plastid thylakoid membrane | 53/200 | 30.60 | 2.30e-65 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 146/200 | 3.90 | 6.50e-64 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 148/200 | 3.37 | 1.50e-56 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 148/200 | 3.37 | 1.53e-56 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 148/200 | 3.20 | 1.32e-53 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 93/200 | 6.49 | 1.59e-53 | - | no |
| C | 3 | GO:0044422 | organelle part | 93/200 | 6.48 | 1.71e-53 | - | no |
| C | 3 | GO:0044424 | intracellular part | 151/200 | 2.96 | 9.96e-51 | - | no |
| C | 3 | GO:0005622 | intracellular | 152/200 | 2.86 | 4.18e-49 | - | no |
| C | 5 | GO:0009526 | plastid envelope | 41/200 | 14.92 | 4.01e-37 | - | no |
| C | 3 | GO:0044464 | cell part | 169/200 | 1.85 | 6.56e-31 | - | no |
| C | 4 | GO:0031967 | organelle envelope | 41/200 | 9.84 | 1.01e-29 | - | no |
| C | 3 | GO:0031975 | envelope | 41/200 | 9.84 | 1.01e-29 | - | no |
| C | 5 | GO:0009532 | plastid stroma | 32/200 | 12.95 | 2.78e-27 | - | no |
| C | 3 | GO:0048046 | apoplast | 25/200 | 12.67 | 1.68e-21 | - | no |
| C | 3 | GO:0016020 | membrane | 79/200 | 2.88 | 2.68e-20 | - | no |
| C | 3 | GO:0043234 | protein complex | 20/200 | 3.06 | 2.89e-06 | - | no |
| C | 3 | GO:0044425 | membrane part | 19/200 | 2.40 | 1.43e-04 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 13/200 | 2.03 | 5.27e-03 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 18/200 | 2.13 | 8.56e-04 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 172/200 | 2.34 | 2.50e-48 | - | no |
| PS | 5 | PO:0020038 | petiole | 171/200 | 2.25 | 7.77e-45 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 171/200 | 2.21 | 7.65e-44 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 173/200 | 2.10 | 2.11e-41 | - | no |
| PS | 4 | PO:0009047 | stem | 172/200 | 2.04 | 7.22e-39 | - | no |
| PS | 5 | PO:0008037 | seedling | 173/200 | 1.96 | 9.21e-37 | - | no |
| PS | 4 | PO:0009025 | leaf | 175/200 | 1.90 | 7.41e-36 | - | no |
| PS | 3 | PO:0009013 | meristem | 165/200 | 2.05 | 1.01e-35 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 162/200 | 2.09 | 3.04e-35 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 167/200 | 1.99 | 9.53e-35 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 166/200 | 1.93 | 2.78e-32 | - | no |
| PS | 3 | PO:0009032 | petal | 167/200 | 1.91 | 5.84e-32 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 169/200 | 1.88 | 5.98e-32 | - | no |
| PS | 4 | PO:0009009 | embryo | 173/200 | 1.79 | 9.29e-31 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 171/200 | 1.81 | 1.21e-30 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 171/200 | 1.81 | 1.21e-30 | - | no |
| PS | 3 | PO:0009010 | seed | 173/200 | 1.77 | 6.05e-30 | - | no |
| PS | 4 | PO:0009001 | fruit | 173/200 | 1.76 | 1.32e-29 | - | no |
| PS | 3 | PO:0006342 | infructescence | 173/200 | 1.76 | 1.32e-29 | - | no |
| PS | 3 | PO:0009031 | sepal | 168/200 | 1.82 | 1.71e-29 | - | no |
| PS | 3 | PO:0006001 | phyllome | 175/200 | 1.71 | 1.54e-28 | - | no |
| PS | 5 | PO:0009052 | pedicel | 155/200 | 1.91 | 3.90e-27 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 157/200 | 1.87 | 8.68e-27 | - | no |
| PS | 5 | PO:0009046 | flower | 173/200 | 1.66 | 5.68e-26 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 173/200 | 1.65 | 1.37e-25 | - | no |
| PS | 3 | PO:0009006 | shoot | 175/200 | 1.61 | 8.20e-25 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 141/200 | 1.70 | 2.34e-17 | - | no |
| PS | 4 | PO:0000293 | guard cell | 45/200 | 4.18 | 3.26e-17 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 45/200 | 4.16 | 3.87e-17 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 45/200 | 4.16 | 4.12e-17 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 45/200 | 4.05 | 1.14e-16 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 45/200 | 4.02 | 1.48e-16 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 45/200 | 3.99 | 1.93e-16 | - | no |
| PS | 4 | PO:0004011 | initial cell | 45/200 | 3.97 | 2.45e-16 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 45/200 | 3.96 | 2.60e-16 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 46/200 | 3.86 | 3.15e-16 | - | no |
| PS | 4 | PO:0005679 | epidermis | 46/200 | 3.71 | 1.31e-15 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 46/200 | 3.71 | 1.34e-15 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 171/200 | 2.22 | 3.87e-44 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 171/200 | 2.22 | 4.22e-44 | - | no |
| PG | 5 | PO:0007133 | leaf production | 173/200 | 2.06 | 5.14e-40 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 173/200 | 2.06 | 5.32e-40 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 173/200 | 2.04 | 1.55e-39 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 164/200 | 1.99 | 2.52e-33 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 161/200 | 2.02 | 5.53e-33 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 162/200 | 1.95 | 3.10e-31 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 158/200 | 1.93 | 8.03e-29 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 165/200 | 1.83 | 1.11e-28 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 172/200 | 1.74 | 1.58e-28 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 165/200 | 1.82 | 2.03e-28 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 173/200 | 1.70 | 2.59e-27 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 169/200 | 1.74 | 2.93e-27 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 174/200 | 1.66 | 2.46e-26 | - | no |
| KW | 0 | chloroplast | - | 131/200 | 7.42 | 3.57e-89 | - | no |
| KW | 0 | thylakoid | - | 54/200 | 25.36 | 8.24e-62 | - | no |
| KW | 0 | photosystem | - | 18/200 | 29.93 | 2.30e-23 | - | no |
| KW | 0 | components | - | 23/200 | 14.16 | 4.33e-21 | - | no |
| KW | 0 | envelope | - | 22/200 | 9.63 | 1.53e-16 | - | no |
| KW | 0 | membrane | - | 66/200 | 2.48 | 1.96e-13 | - | no |
| KW | 0 | stroma | - | 17/200 | 9.12 | 6.98e-13 | - | no |
| KW | 0 | light | - | 19/200 | 7.12 | 3.77e-12 | - | no |
| KW | 0 | apoplast | - | 13/200 | 7.75 | 1.81e-09 | - | no |
| KW | 0 | dehydrogenase | - | 16/200 | 5.52 | 6.69e-09 | - | no |
| KW | 0 | phosphate | - | 16/200 | 5.28 | 1.29e-08 | - | no |
| KW | 0 | catalytic | - | 29/200 | 2.85 | 1.09e-07 | - | no |
| KW | 0 | electron | - | 16/200 | 4.49 | 1.31e-07 | - | no |
| KW | 0 | subunit | - | 23/200 | 3.14 | 3.77e-07 | - | no |
| KW | 0 | complex | - | 25/200 | 2.95 | 4.02e-07 | - | no |
| KW | 0 | defense | - | 15/200 | 4.30 | 5.27e-07 | - | no |
| KW | 0 | encodes | - | 50/200 | 1.96 | 7.73e-07 | - | no |
| KW | 0 | response | - | 38/200 | 2.12 | 2.95e-06 | - | no |
| KW | 0 | ipr016040 | - | 10/200 | 4.64 | 1.23e-05 | - | no |
| KW | 0 | process | - | 39/200 | 1.90 | 2.76e-05 | - | no |
| KW | 0 | biosynthetic | - | 18/200 | 2.52 | 1.11e-04 | - | no |
| KW | 0 | enzyme | - | 10/200 | 2.96 | 6.33e-04 | - | no |
| KW | 0 | class | - | 14/200 | 2.34 | 1.08e-03 | - | no |
| KW | 0 | oxidoreductase | - | 11/200 | 2.36 | 2.70e-03 | - | no |
| KW | 0 | alpha | - | 15/200 | 2.06 | 2.86e-03 | - | no |
| KW | 0 | putative | - | 35/200 | 1.52 | 4.58e-03 | - | no |
| KW | 0 | synthase | - | 10/200 | 2.28 | 4.91e-03 | - | no |
| KW | 0 | transport | - | 17/200 | 1.75 | 9.14e-03 | - | no |
| KW | 0 | kinase | - | 18/200 | 1.71 | 9.82e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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