OMAT3P005190http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u300051900000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P013970 | 0.960319 | - | AT5G48940 | leucine-rich repeat transmembrane protein kinase, putative | - | - |
| OMAT1P007660 | 0.946256 | - | AT1G20900 | ESC (ESCAROLA) | - | - |
| OMAT2P012730 | 0.943092 | - | AT2G45430 | DNA-binding protein-related | - | - |
| OMAT1P113850 | 0.941192 | - | AT1G55740 | AtSIP1 (Arabidopsis thaliana seed imbibition 1) | - | - |
| OMAT1P002880 | 0.941161 | - | AT1G08590 | CLAVATA1 receptor kinase (CLV1) | - | - |
| OMAT2P004560 | 0.930505 | - | AT2G23050 | NPY4 (NAKED PINS IN YUC MUTANTS 4) | - | - |
| OMAT2P104860 | 0.927483 | - | AT2G25980 | jacalin lectin family protein | - | - |
| OMAT4P006960 | 0.925937 | - | AT4G22810 | DNA-binding protein-related | - | - |
| OMAT5P009870 | 0.925864 | - | AT5G35940 | jacalin lectin family protein | - | - |
| OMAT4P006770 | 0.925768 | - | AT4G22214 | Encodes a defensin-like (DEFL) family protein. | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P016150 | -0.817469 | - | AT5G54770 | THI1 | - | - |
| OMAT5P102330 | -0.691249 | - | AT5G08410 | FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2) | - | - |
| OMAT1P015160 | -0.686929 | - | AT1G54520 | unknown protein | - | - |
| OMAT3P108680 | -0.6694 | - | AT3G26630 | pentatricopeptide (PPR) repeat-containing protein | - | - |
| OMAT5P008510 | -0.650778 | - | AT5G24930 | zinc finger (B-box type) family protein | - | - |
| OMAT4P001380 | -0.648412 | - | AT4G04020 | FIB (FIBRILLIN) | - | - |
| OMAT2P007330 | -0.642739 | - | AT2G30950 | VAR2 (VARIEGATED 2) | - | - |
| OMAT5P115400 | -0.641003 | - | AT5G58330 | malate dehydrogenase (NADP), chloroplast, putative | - | - |
| OMAT5P018450 | -0.640799 | - | AT5G60600 | HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) | - | - |
| OMAT5P116510 | -0.628744 | - | AT5G61410 | RPE | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.11e-07 | :20 terms with high significance | |
| 1.11e-07 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0010035 | response to inorganic substance | 10/200 | 3.51 | 1.53e-04 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 20/200 | 2.23 | 2.82e-04 | - | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 23/200 | 2.02 | 4.75e-04 | - | no |
| B | 3 | GO:0006810 | transport | 21/200 | 2.05 | 6.37e-04 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 21/200 | 2.04 | 6.62e-04 | - | no |
| B | 4 | GO:0006519 | cellular amino acid and derivative metabolic process | 10/200 | 2.88 | 8.08e-04 | - | no |
| B | 3 | GO:0009056 | catabolic process | 11/200 | 2.31 | 3.25e-03 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 15/200 | 2.02 | 3.32e-03 | - | no |
| C | 3 | GO:0016020 | membrane | 61/200 | 2.23 | 2.06e-10 | - | no |
| C | 3 | GO:0044464 | cell part | 132/200 | 1.44 | 2.43e-09 | - | yes |
| C | 5 | GO:0005739 | mitochondrion | 21/200 | 3.28 | 5.32e-07 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 28/200 | 2.26 | 1.76e-05 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 59/200 | 1.58 | 7.56e-05 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 73/200 | 1.43 | 2.03e-04 | - | yes |
| C | 3 | GO:0005622 | intracellular | 75/200 | 1.41 | 2.72e-04 | - | yes |
| C | 4 | GO:0044444 | cytoplasmic part | 53/200 | 1.53 | 4.30e-04 | - | yes |
| C | 3 | GO:0044425 | membrane part | 16/200 | 2.02 | 2.61e-03 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 60/200 | 1.37 | 3.03e-03 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 60/200 | 1.37 | 3.04e-03 | - | yes |
| C | 5 | GO:0005829 | cytosol | 10/200 | 2.42 | 3.16e-03 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 61/200 | 1.32 | 6.10e-03 | - | yes |
| M | 3 | GO:0022857 | transmembrane transporter activity | 21/200 | 3.74 | 5.78e-08 | - | no |
| M | 5 | GO:0015075 | ion transmembrane transporter activity | 13/200 | 4.15 | 3.74e-06 | - | no |
| M | 3 | GO:0016829 | lyase activity | 10/200 | 5.16 | 4.53e-06 | - | no |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 15/200 | 3.40 | 1.05e-05 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 21/200 | 2.49 | 4.13e-05 | - | yes |
| M | 3 | GO:0022892 | substrate-specific transporter activity | 15/200 | 2.90 | 7.00e-05 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 25/200 | 1.84 | 1.10e-03 | - | yes |
| M | 4 | GO:0043169 | cation binding | 25/200 | 1.74 | 2.44e-03 | - | yes |
| M | 3 | GO:0043167 | ion binding | 25/200 | 1.74 | 2.44e-03 | 0 | yes |
| M | 3 | GO:0016740 | transferase activity | 26/200 | 1.59 | 6.91e-03 | - | no |
| PS | 3 | PO:0009005 | root | 167/200 | 1.86 | 2.60e-30 | - | yes |
| PS | 5 | PO:0008037 | seedling | 137/200 | 1.55 | 9.64e-13 | - | yes |
| PS | 3 | PO:0009010 | seed | 144/200 | 1.47 | 8.88e-12 | - | yes |
| PS | 4 | PO:0009001 | fruit | 144/200 | 1.46 | 1.45e-11 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 144/200 | 1.46 | 1.45e-11 | - | yes |
| PS | 4 | PO:0009009 | embryo | 142/200 | 1.47 | 2.13e-11 | - | yes |
| PS | 3 | PO:0009006 | shoot | 148/200 | 1.36 | 2.72e-09 | - | yes |
| PS | 4 | PO:0005679 | epidermis | 34/200 | 2.75 | 2.39e-08 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 34/200 | 2.74 | 2.42e-08 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 31/200 | 2.79 | 6.95e-08 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 31/200 | 2.77 | 8.15e-08 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 31/200 | 2.75 | 9.54e-08 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 32/200 | 2.68 | 1.05e-07 | - | no |
| PS | 4 | PO:0004011 | initial cell | 31/200 | 2.73 | 1.10e-07 | - | no |
| PS | 4 | PO:0000293 | guard cell | 30/200 | 2.79 | 1.11e-07 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 31/200 | 2.73 | 1.14e-07 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 30/200 | 2.78 | 1.23e-07 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 30/200 | 2.77 | 1.28e-07 | - | no |
| PS | 3 | PO:0006001 | phyllome | 137/200 | 1.34 | 2.54e-07 | - | yes |
| PS | 4 | PO:0009025 | leaf | 123/200 | 1.34 | 3.60e-06 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 134/200 | 1.28 | 9.09e-06 | - | yes |
| PS | 5 | PO:0009046 | flower | 133/200 | 1.28 | 1.18e-05 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 114/200 | 1.32 | 2.55e-05 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 114/200 | 1.21 | 2.07e-03 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 114/200 | 1.21 | 2.07e-03 | - | yes |
| PS | 3 | PO:0009031 | sepal | 111/200 | 1.20 | 3.30e-03 | - | yes |
| PS | 5 | PO:0020038 | petiole | 93/200 | 1.22 | 5.97e-03 | - | no |
| PS | 3 | PO:0009013 | meristem | 97/200 | 1.21 | 6.89e-03 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 99/200 | 1.20 | 7.26e-03 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 133/200 | 1.27 | 1.82e-05 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 117/200 | 1.29 | 6.02e-05 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 108/200 | 1.31 | 9.55e-05 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 124/200 | 1.26 | 1.21e-04 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 115/200 | 1.28 | 1.49e-04 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 126/200 | 1.24 | 2.22e-04 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 106/200 | 1.28 | 3.97e-04 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 98/200 | 1.23 | 3.24e-03 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 115/200 | 1.19 | 4.26e-03 | - | yes |
| KW | 0 | hypocotyl | - | 20/200 | 8.57 | 3.07e-14 | - | no |
| KW | 0 | membrane | - | 60/200 | 2.25 | 1.88e-10 | - | no |
| KW | 0 | cadmium | - | 11/200 | 6.60 | 1.34e-07 | - | no |
| KW | 0 | mitochondrion | - | 20/200 | 3.65 | 1.72e-07 | - | no |
| KW | 0 | mitochondrial | - | 12/200 | 5.32 | 5.14e-07 | - | no |
| KW | 0 | lyase | - | 11/200 | 5.54 | 8.64e-07 | - | no |
| KW | 0 | transmembrane | - | 21/200 | 2.89 | 4.14e-06 | - | no |
| KW | 0 | dehydrogenase | - | 12/200 | 4.14 | 8.04e-06 | - | no |
| KW | 0 | class | - | 18/200 | 3.00 | 1.04e-05 | 6.00E-36 | yes |
| KW | 0 | bilateral | - | 13/200 | 3.56 | 2.08e-05 | - | no |
| KW | 0 | process | - | 39/200 | 1.90 | 2.76e-05 | - | no |
| KW | 0 | catalytic | - | 24/200 | 2.36 | 3.18e-05 | - | no |
| KW | 0 | response | - | 35/200 | 1.95 | 4.26e-05 | - | no |
| KW | 0 | pathway | - | 10/200 | 3.72 | 9.16e-05 | - | no |
| KW | 0 | synthase | - | 13/200 | 2.96 | 1.48e-04 | 2.00E-34 | no |
| KW | 0 | plasma | - | 24/200 | 2.09 | 2.11e-04 | - | no |
| KW | 0 | metabolic | - | 24/200 | 2.09 | 2.18e-04 | - | no |
| KW | 0 | cotyledon | - | 14/200 | 2.66 | 2.88e-04 | - | no |
| KW | 0 | expanded | - | 12/200 | 2.75 | 4.89e-04 | - | no |
| KW | 0 | transporter | - | 16/200 | 2.30 | 6.63e-04 | - | no |
| KW | 0 | tyrosine | - | 10/200 | 2.82 | 9.54e-04 | - | no |
| KW | 0 | differentiation | - | 27/200 | 1.79 | 1.17e-03 | - | no |
| KW | 0 | signaling | - | 10/200 | 2.69 | 1.40e-03 | - | no |
| KW | 0 | stage | - | 32/200 | 1.65 | 1.68e-03 | - | no |
| KW | 0 | nucleotide | - | 14/200 | 2.20 | 1.95e-03 | - | no |
| KW | 0 | conserved | - | 24/200 | 1.77 | 2.27e-03 | - | yes |
| KW | 0 | petal | - | 25/200 | 1.71 | 3.00e-03 | - | no |
| KW | 0 | receptor | - | 11/200 | 2.31 | 3.18e-03 | - | no |
| KW | 0 | expansion | - | 25/200 | 1.70 | 3.31e-03 | - | no |
| KW | 0 | transport | - | 18/200 | 1.85 | 4.26e-03 | - | no |
| KW | 0 | kinase | - | 19/200 | 1.80 | 4.71e-03 | - | no |
| KW | 0 | leucine | - | 11/200 | 2.10 | 6.86e-03 | - | no |
| KW | 0 | putative | - | 34/200 | 1.47 | 8.00e-03 | - | yes |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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