OMAT5P104160http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u501041600000i
Other supporting information
| Gene Model | |
 | |
| Correlation Plot | |
 | |
Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P106140 | 0.993767 | - | AT3G18600 | DEAD/DEAH box helicase, putative | - | - |
| OMAT5P009180 | 0.993457 | - | AT5G27120 | SAR DNA-binding protein, putative | - | - |
| OMAT3P016460 | 0.992223 | - | AT3G58660 | 60S ribosomal protein-related | - | - |
| OMAT5P016290 | 0.9913 | - | AT5G55125 | unknown protein | - | - |
| OMAT5P001100 | 0.990914 | - | AT5G03670 | unknown protein | AT5G03668 | other RNA |
| OMAT1P106010 | 0.990579 | - | AT1G18800 | NRP2 (NAP1-RELATED PROTEIN 2) | - | - |
| OMAT2P105490 | 0.990181 | - | AT2G27775 | unknown protein | - | - |
| OMAT2P006190 | 0.990097 | - | AT2G27840 | HDT4 | - | - |
| OMAT1P005690 | 0.989995 | - | AT1G15870 | mitochondrial glycoprotein family protein / MAM33 family protein | - | - |
| OMAT5P101725 | 0.989348 | - | AT5G06550 | FUNCTIONS IN: molecular_function unknown | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P007540 | -0.677135 | - | AT1G20620 | CAT3 (CATALASE 3) | - | - |
| OMAT4P107010 | -0.674037 | - | AT4G25650 | ACD1-LIKE (ACD1-LIKE) | - | - |
| OMAT5P108800 | -0.673639 | - | AT5G36160 | aminotransferase-related | - | - |
| OMAT4P101420 | -0.661146 | - | AT4G05050 | UBQ11 (UBIQUITIN 11) | - | - |
| OMAT3P112910 | -0.656724 | - | AT3G53990 | universal stress protein (USP) family protein | - | - |
| OMAT4P104230 | -0.654537 | - | AT4G17170 | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) | - | - |
| OMAT3P100900 | -0.647167 | - | AT3G03150 | unknown protein | - | - |
| OMAT4P102930 | -0.636992 | - | AT4G13460 | SUVH9 | - | - |
| OMAT2P002180 | -0.629537 | - | AT2G16050 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT2P108545 | -0.627461 | - | AT2G36895 | unknown protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.17e-12 | :20 terms with high significance | |
| 1.17e-12 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0042254 | ribosome biogenesis | 28/200 | 21.86 | 9.64e-31 | - | no |
| B | 3 | GO:0022613 | ribonucleoprotein complex biogenesis | 28/200 | 21.16 | 2.54e-30 | - | no |
| B | 5 | GO:0006364 | rRNA processing | 21/200 | 33.57 | 5.32e-28 | - | no |
| B | 5 | GO:0009451 | RNA modification | 20/200 | 26.39 | 1.95e-24 | - | no |
| B | 5 | GO:0006396 | RNA processing | 23/200 | 10.39 | 5.89e-18 | - | yes |
| B | 4 | GO:0010467 | gene expression | 45/200 | 2.21 | 9.82e-08 | - | yes |
| B | 5 | GO:0016070 | RNA metabolic process | 25/200 | 2.94 | 4.36e-07 | - | yes |
| B | 5 | GO:0006412 | translation | 22/200 | 3.03 | 1.15e-06 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 61/200 | 1.58 | 5.43e-05 | - | yes |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 54/200 | 1.53 | 3.40e-04 | - | yes |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 27/200 | 1.80 | 1.07e-03 | - | yes |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 29/200 | 1.72 | 1.47e-03 | - | yes |
| B | 3 | GO:0044238 | primary metabolic process | 67/200 | 1.35 | 2.12e-03 | - | yes |
| B | 4 | GO:0043412 | macromolecule modification | 20/200 | 1.76 | 4.95e-03 | - | no |
| B | 4 | GO:0019538 | protein metabolic process | 34/200 | 1.47 | 7.97e-03 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 40/200 | 11.47 | 1.22e-31 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 38/200 | 6.38 | 7.92e-21 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 38/200 | 6.38 | 7.92e-21 | - | no |
| C | 4 | GO:0005840 | ribosome | 22/200 | 8.59 | 1.80e-15 | - | no |
| C | 4 | GO:0033279 | ribosomal subunit | 18/200 | 11.08 | 4.85e-15 | - | no |
| C | 5 | GO:0005730 | nucleolus | 17/200 | 9.92 | 1.67e-13 | - | no |
| C | 5 | GO:0022626 | cytosolic ribosome | 17/200 | 9.24 | 5.60e-13 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 20/200 | 7.37 | 5.63e-13 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 20/200 | 7.36 | 5.88e-13 | - | no |
| C | 5 | GO:0015934 | large ribosomal subunit | 13/200 | 14.13 | 5.89e-13 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 45/200 | 3.14 | 1.17e-12 | - | no |
| C | 3 | GO:0044422 | organelle part | 45/200 | 3.14 | 1.21e-12 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 17/200 | 7.03 | 5.21e-11 | - | no |
| C | 3 | GO:0005622 | intracellular | 95/200 | 1.78 | 7.41e-11 | - | no |
| C | 3 | GO:0044424 | intracellular part | 92/200 | 1.81 | 1.01e-10 | - | no |
| C | 5 | GO:0044445 | cytosolic part | 13/200 | 8.68 | 4.14e-10 | - | no |
| C | 4 | GO:0044428 | nuclear part | 17/200 | 5.11 | 8.19e-09 | - | no |
| C | 5 | GO:0005829 | cytosol | 16/200 | 3.87 | 1.05e-06 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 75/200 | 1.62 | 1.49e-06 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 20/200 | 3.13 | 2.04e-06 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 57/200 | 1.64 | 3.19e-05 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 59/200 | 1.58 | 7.56e-05 | - | no |
| C | 3 | GO:0044464 | cell part | 113/200 | 1.23 | 8.86e-04 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 60/200 | 1.37 | 3.03e-03 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 60/200 | 1.37 | 3.04e-03 | - | no |
| M | 3 | GO:0003735 | structural constituent of ribosome | 21/200 | 9.70 | 5.91e-16 | - | no |
| PS | 5 | PO:0009052 | pedicel | 117/200 | 1.44 | 1.19e-07 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 120/200 | 1.39 | 4.65e-07 | - | yes |
| PS | 5 | PO:0020038 | petiole | 109/200 | 1.43 | 8.18e-07 | - | yes |
| PS | 3 | PO:0009005 | root | 120/200 | 1.33 | 7.16e-06 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 112/200 | 1.34 | 2.22e-05 | - | yes |
| PS | 3 | PO:0009032 | petal | 115/200 | 1.31 | 3.71e-05 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 104/200 | 1.35 | 4.51e-05 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 108/200 | 1.31 | 9.85e-05 | - | yes |
| PS | 3 | PO:0009031 | sepal | 118/200 | 1.28 | 1.02e-04 | - | yes |
| PS | 5 | PO:0008037 | seedling | 113/200 | 1.28 | 1.67e-04 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 108/200 | 1.29 | 2.33e-04 | - | no |
| PS | 4 | PO:0009025 | leaf | 116/200 | 1.26 | 2.44e-04 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 113/200 | 1.26 | 4.21e-04 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 117/200 | 1.24 | 4.91e-04 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 117/200 | 1.24 | 4.91e-04 | - | yes |
| PS | 4 | PO:0009009 | embryo | 119/200 | 1.23 | 5.74e-04 | - | yes |
| PS | 3 | PO:0009010 | seed | 119/200 | 1.22 | 1.04e-03 | - | yes |
| PS | 4 | PO:0009047 | stem | 105/200 | 1.24 | 1.28e-03 | - | yes |
| PS | 4 | PO:0009001 | fruit | 119/200 | 1.21 | 1.32e-03 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 119/200 | 1.21 | 1.32e-03 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 98/200 | 1.26 | 1.37e-03 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 92/200 | 1.25 | 2.78e-03 | - | no |
| PS | 3 | PO:0009013 | meristem | 98/200 | 1.22 | 4.59e-03 | - | no |
| PS | 3 | PO:0006001 | phyllome | 119/200 | 1.16 | 7.94e-03 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 117/200 | 1.47 | 2.90e-08 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 118/200 | 1.43 | 1.28e-07 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 118/200 | 1.42 | 2.08e-07 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 114/200 | 1.39 | 1.83e-06 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 114/200 | 1.36 | 7.49e-06 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 114/200 | 1.35 | 7.57e-06 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 106/200 | 1.38 | 1.07e-05 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 106/200 | 1.38 | 1.10e-05 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 114/200 | 1.35 | 1.10e-05 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 118/200 | 1.31 | 2.63e-05 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 118/200 | 1.30 | 3.33e-05 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 118/200 | 1.22 | 1.11e-03 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 119/200 | 1.21 | 1.57e-03 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 119/200 | 1.17 | 6.11e-03 | - | yes |
| KW | 0 | ribosomal | - | 26/200 | 8.61 | 5.93e-18 | 2.00E-08 | no |
| KW | 0 | ribosome | - | 24/200 | 9.09 | 2.85e-17 | - | no |
| KW | 0 | constituent | - | 21/200 | 7.49 | 1.16e-13 | - | no |
| KW | 0 | translation | - | 25/200 | 5.04 | 6.21e-12 | - | no |
| KW | 0 | cytosolic | - | 17/200 | 7.94 | 7.07e-12 | - | no |
| KW | 0 | nucleolus | - | 14/200 | 10.30 | 9.21e-12 | - | no |
| KW | 0 | structural | - | 21/200 | 5.99 | 9.68e-12 | - | no |
| KW | 0 | large | - | 13/200 | 8.48 | 5.66e-10 | - | no |
| KW | 0 | subunit | - | 26/200 | 3.55 | 5.80e-09 | - | no |
| KW | 0 | mitochondrial | - | 14/200 | 6.21 | 1.02e-08 | - | no |
| KW | 0 | ipr015943 | - | 10/200 | 6.65 | 3.87e-07 | - | no |
| KW | 0 | ipr011046 | - | 10/200 | 6.44 | 5.29e-07 | - | no |
| KW | 0 | mitochondrion | - | 16/200 | 2.92 | 4.10e-05 | - | no |
| KW | 0 | nucleotide | - | 16/200 | 2.51 | 2.43e-04 | - | no |
| KW | 0 | intracellular | - | 12/200 | 2.33 | 2.19e-03 | - | no |
| KW | 0 | motif | - | 11/200 | 2.26 | 3.77e-03 | - | no |
| KW | 0 | complex | - | 16/200 | 1.89 | 5.17e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
Top Page
