ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)Genes with tiling-array support (Annotated)

AT3G03710.1
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u320371001000i

AT3G03710.1(↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot



Expression profile (Values are plotted in Log(2) values.)


Genes with related expresssion profiles.
Positively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
AT4G38160.20.949625pde191 (pigment defective 191)OMAT4P013270---
AT2G25840.20.939548OVA4 (ovule abortion 4)OMAT2P005470---
AT5G16715.10.927328EMB2247 (embryo defective 2247)OMAT5P005840,OMAT5P005845[OMAT5P005840]-, [OMAT5P005845]---
AT1G48520.10.921879GATB (GLU-ADT SUBUNIT B)OMAT1P013310---
AT4G29060.10.920875emb2726 (embryo defective 2726)OMAT4P009530-OMAT4P108110-
AT1G53800.20.913436endonucleaseOMAT1P014910---
AT3G48110.10.910485EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1)OMAT3P012470---
AT2G24020.10.907849unknown protein----
AT1G11870.20.906501SRS (SERYL-TRNA SYNTHETASE)OMAT1P004090---
AT5G22640.10.902818emb1211 (embryo defective 1211)OMAT5P007630---
Negatively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
AT1G31470.1-0.802615NFD4 (NUCLEAR FUSION DEFECTIVE 4)OMAT1P109920---
AT4G24990.1-0.773241ATGP4OMAT4P106750---
AT4G10810.1-0.753311unknown proteinOMAT4P102150---
AT4G25230.1-0.750321RIN2 (RPM1 INTERACTING PROTEIN 2)OMAT4P007880---
AT5G66930.3-0.749796unknown proteinOMAT5P020810---
AT2G45210.1-0.749701auxin-responsive protein-relatedOMAT2P012640---
AT1G02890.1-0.743776AAA-type ATPase family proteinOMAT1P100590---
AT3G32968.1-0.739486transposable element gene----
AT4G17530.1-0.733483ATRAB1C----
AT4G38570.1-0.732487PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2)OMAT4P111690---

Get whole results


Over-Representation Analysis Result

p-value <= 4.75e-46:20 terms with high significance
4.75e-46 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
(Link to PosMed)
Found on gene annotation
B5GO:0006520cellular amino acid metabolic process19/2009.034.69e-14-no
B5GO:0044106cellular amine metabolic process19/2008.361.97e-13-no
B4GO:0009308amine metabolic process19/2007.591.15e-12-no
B4GO:0048608reproductive structure development25/2005.134.37e-12-no
B4GO:0042180cellular ketone metabolic process23/2005.132.89e-11-yes
B3GO:0003006reproductive developmental process25/2004.546.32e-11-no
B5GO:0043436oxoacid metabolic process22/2005.001.22e-10-yes
B4GO:0006082organic acid metabolic process22/2004.981.29e-10-yes
B4GO:0009793embryonic development ending in seed dormancy16/2006.981.93e-10-no
B3GO:0009790embryonic development17/2006.442.17e-10-no
B5GO:0006412translation28/2003.862.27e-10-no
B3GO:0009791post-embryonic development25/2004.222.94e-10-no
B3GO:0048316seed development17/2006.243.58e-10-no
B4GO:0006519cellular amino acid and derivative metabolic process19/2005.474.06e-10-no
B3GO:0022414reproductive process25/2004.154.31e-10-no
B5GO:0010154fruit development17/2005.957.62e-10-no
B5GO:0016070RNA metabolic process29/2003.412.04e-09-no
B3GO:0044237cellular metabolic process84/2001.782.67e-09-yes
B4GO:0034641cellular nitrogen compound metabolic process46/2002.368.75e-09-yes
B3GO:0006807nitrogen compound metabolic process46/2002.321.61e-08-yes
B4GO:0010467gene expression46/2002.263.56e-081.77E-15no
B3GO:0044281small molecule metabolic process27/2003.001.01e-07-yes
B3GO:0048856anatomical structure development26/2002.913.31e-07-no
B5GO:0044271cellular nitrogen compound biosynthetic process13/2004.915.19e-07-yes
B4GO:0044249cellular biosynthetic process53/2001.881.15e-06-yes
B4GO:0019538protein metabolic process46/2001.991.41e-06-no
B3GO:0009058biosynthetic process54/2001.851.46e-06-yes
B3GO:0043170macromolecule metabolic process66/2001.711.53e-06-no
B4GO:0044260cellular macromolecule metabolic process61/2001.732.70e-06-no
B3GO:0007275multicellular organismal development27/2002.542.78e-06-no
B5GO:0044267cellular protein metabolic process41/2002.014.49e-06-no
B5GO:0090304nucleic acid metabolic process32/2002.131.61e-05-no
B3GO:0044238primary metabolic process75/2001.512.26e-05-yes
B4GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process33/2001.966.70e-05-no
B5GO:0034645cellular macromolecule biosynthetic process37/2001.723.81e-04-no
B4GO:0009059macromolecule biosynthetic process37/2001.714.04e-04-no
B3GO:0006996organelle organization10/2003.005.80e-04-no
B4GO:0044283small molecule biosynthetic process11/2002.422.18e-03-no
C5GO:0009536plastid148/2008.013.15e-1103.64E-21yes
C4GO:0044444cytoplasmic part157/2004.521.56e-81-yes
C4GO:0005737cytoplasm160/2004.272.58e-80-yes
C4GO:0044435plastid part78/20013.711.30e-68-yes
C4GO:0043231intracellular membrane-bounded organelle159/2003.621.59e-68-yes
C3GO:0043227membrane-bounded organelle159/2003.621.62e-68-yes
C3GO:0043229intracellular organelle159/2003.442.87e-65-yes
C3GO:0044424intracellular part163/2003.202.67e-63-yes
C5GO:0044434chloroplast part73/20013.181.17e-62-yes
C3GO:0005622intracellular165/2003.101.19e-62-yes
C5GO:0009532plastid stroma51/20020.631.71e-53-yes
C3GO:0044446intracellular organelle part83/2005.793.36e-43-yes
C3GO:0044422organelle part83/2005.783.59e-43-yes
C3GO:0044464cell part170/2001.869.55e-32-yes
C4GO:0009579thylakoid32/20012.853.51e-27-no
C5GO:0009526plastid envelope31/20011.281.27e-24-no
C4GO:0031967organelle envelope33/2007.923.63e-21-no
C3GO:0031975envelope33/2007.923.63e-21-no
C5GO:0031976plastid thylakoid24/20012.063.37e-20-no
C4GO:0031984organelle subcompartment24/20011.983.90e-20-no
C5GO:0055035plastid thylakoid membrane22/20012.703.34e-19-no
C5GO:0042651thylakoid membrane22/20012.158.99e-19-no
C4GO:0044436thylakoid part23/20011.151.17e-18-no
C4GO:0034357photosynthetic membrane22/20011.991.21e-18-no
C5GO:0005739mitochondrion24/2003.757.04e-09-no
C3GO:0043228non-membrane-bounded organelle22/2003.693.70e-08-no
C4GO:0043232intracellular non-membrane-bounded organelle22/2003.693.70e-08-no
C4GO:0005840ribosome13/2005.073.53e-07-no
C3GO:0030529ribonucleoprotein complex14/2004.012.66e-06-no
C3GO:0016020membrane46/2001.681.22e-04-no
M3GO:0016874ligase activity16/2005.862.75e-09-no
M5GO:0032555purine ribonucleotide binding29/2002.955.12e-08-no
M4GO:0032553ribonucleotide binding29/2002.955.12e-08-no
M3GO:0000166nucleotide binding34/2002.571.15e-07-no
M4GO:0017076purine nucleotide binding29/2002.791.72e-07-no
M4GO:0003723RNA binding21/2003.032.02e-060yes
M3GO:0003735structural constituent of ribosome11/2005.082.14e-06-no
M5GO:0030554adenyl nucleotide binding22/2002.434.07e-05-no
M4GO:0001883purine nucleoside binding22/2002.434.07e-05-no
M3GO:0001882nucleoside binding22/2002.434.23e-05-no
M5GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides13/2002.921.70e-04-no
M4GO:0016817hydrolase activity, acting on acid anhydrides13/2002.891.88e-04-no
M3GO:0003676nucleic acid binding36/2001.524.00e-030yes
PS5PO:0020038petiole182/2002.394.58e-57-yes
PS5PO:0020039leaf lamina182/2002.214.48e-51-yes
PS4PO:0020030cotyledon172/2002.342.50e-484.99E-18yes
PS5PO:0000013cauline leaf175/2002.275.94e-48-yes
PS4PO:0009025leaf184/2002.003.41e-45-yes
PS4PO:0000037shoot apex179/2002.081.56e-44-yes
PS5PO:0009052pedicel172/2002.122.36e-41-yes
PS5PO:0009028microsporophyll174/2002.073.32e-41-yes
PS3PO:0009032petal177/2002.023.93e-41-yes
PS4PO:0009047stem174/2002.068.57e-41-yes
PS3PO:0009013meristem170/2002.123.09e-40-yes
PS3PO:0009031sepal178/2001.931.95e-38-yes
PS5PO:0009027megasporophyll171/2002.042.99e-38-yes
PS5PO:0008037seedling174/2001.971.06e-371.16E-17yes
PS3PO:0006001phyllome184/2001.794.80e-37-yes
PS5PO:0008034leaf whorl178/2001.895.53e-37-yes
PS4PO:0008033phyllome whorl178/2001.895.53e-37-yes
PS4PO:0009026sporophyll174/2001.932.23e-36-yes
PS3PO:0009010seed180/2001.842.33e-36-yes
PS4PO:0009009embryo179/2001.852.98e-36-yes
PS4PO:0009001fruit180/2001.835.48e-36-yes
PS3PO:0006342infructescence180/2001.835.48e-36-yes
PS4PO:0000230inflorescence meristem162/2002.093.04e-35-yes
PS3PO:0009006shoot184/2001.697.54e-33-yes
PS5PO:0009046flower180/2001.735.22e-32-yes
PS4PO:0009049inflorescence180/2001.721.37e-31-yes
PS3PO:0009005root158/2001.761.23e-23-yes
PS4PO:0000293guard cell51/2004.747.68e-22-yes
PS4PO:0000351guard mother cell51/2004.729.36e-22-yes
PS3PO:0000070meristemoid51/2004.711.01e-21-yes
PS5PO:0006016leaf epidermis51/2004.593.32e-21-yes
PS5PO:0006035shoot epidermis51/2004.554.52e-21-yes
PS5PO:0000349epidermal initial51/2004.526.14e-21-yes
PS4PO:0004011initial cell51/2004.498.14e-21-yes
PS3PO:0004010meristematic cell51/2004.498.73e-21-yes
PS3PO:0004013epidermal cell51/2004.287.13e-20-yes
PS4PO:0005679epidermis51/2004.123.64e-19-yes
PS3PO:0009014dermal tissue51/2004.123.71e-19-yes
PS3PO:0020091male gametophyte138/2001.669.00e-16-yes
PG4PO:00010544 leaf senescence stage177/2002.301.93e-50-yes
PG3PO:0001050leaf development stages177/2002.302.12e-50-yes
PG5PO:0001081F mature embryo stage176/2002.216.08e-47-yes
PG5PO:0001078E expanded cotyledon stage178/2002.144.75e-46-yes
PG5PO:0007133leaf production178/2002.124.34e-45-yes
PG4PO:00071121 main shoot growth178/2002.124.50e-45-yes
PG5PO:0001185C globular stage176/2002.149.50e-45-yes
PG3PO:0007134A vegetative growth178/2002.101.39e-44-yes
PG5PO:0004507D bilateral stage176/2002.141.78e-44-yes
PG4PO:0007631embryo development stages179/2001.992.95e-41-yes
PG3PO:0001170seed development stages179/2001.986.02e-41-yes
PG5PO:0007604corolla developmental stages179/2001.819.71e-35-yes
PG4PO:00076003 floral organ development stages180/2001.771.76e-33-yes
PG4PO:00076164 anthesis176/2001.813.64e-33-yes
PG3PO:0007615flower development stages180/2001.721.55e-31-yes
KW0chloroplast-140/2007.931.86e-1011.97E-17yes
KW0stroma-35/20018.771.68e-35-yes
KW0thylakoid-24/20011.271.71e-19-no
KW0plastid-20/20013.254.88e-183.64E-21no
KW0envelope-23/20010.061.23e-17-no
KW0defective-22/2008.996.75e-16-no
KW0translation-26/2005.259.83e-13-no
KW0bacterial-15/2009.943.38e-12-yes
KW0synthetase-14/2009.742.04e-11-no
KW0ending-15/2008.434.03e-11-no
KW0embryonic-16/2007.457.06e-11-no
KW0dormancy-15/2007.921.01e-10-no
KW0components-13/2008.011.19e-09-no
KW0ribosome-15/2005.681.20e-08-no
KW0biogenesis-11/2008.091.44e-08-no
KW0ribosomal-15/2004.977.62e-08-no
KW0terminal-43/2002.231.51e-07-no
KW0development-23/2003.301.54e-072.18E-15no
KW0mitochondrion-20/2003.651.72e-07-no
KW0nucleotide-21/2003.304.84e-07-no
KW0pentatricopeptide-13/2004.481.56e-06-no
KW0ligase-15/2003.842.27e-06-no
KW0alpha-21/2002.884.48e-06-no
KW0conserved-31/2002.294.99e-06-no
KW0ipr002885-12/2004.285.61e-06-no
KW0embryo-20/2002.887.21e-06-no
KW0motif-16/2003.298.86e-06-no
KW0structural-13/2003.711.33e-05-no
KW0constituent-11/2003.922.84e-05-no
KW0biosynthetic-19/2002.663.59e-05-yes
KW0class-17/2002.843.62e-05-no
KW0nucleic-16/2002.453.32e-040yes
KW0synthase-12/2002.735.14e-04-no
KW0dependent-24/2001.791.96e-032.39E-15yes
KW0catalytic-19/2001.873.10e-03-no
KW0membrane-38/2001.438.81e-03-no
KW0containing-26/2001.568.82e-039.00E-09no
(*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

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AT3G03710.1

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

status_about_related_gene
  • with_OMAT_gene
Correlation_Score
  • 0.676042
description
  • AT3G03710.1(↑ Click "Links", if this line appears at the beginning.)

    Other supporting information

    Gene Model

    Correlation Plot



    Expression profile (Values are plotted in Log(2) values.)


    Genes with related expresssion profiles.
    Positively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    AT4G38160.20.949625pde191 (pigment defective 191)OMAT4P013270---
    AT2G25840.20.939548OVA4 (ovule abortion 4)OMAT2P005470---
    AT5G16715.10.927328EMB2247 (embryo defective 2247)OMAT5P005840,OMAT5P005845[OMAT5P005840]-, [OMAT5P005845]---
    AT1G48520.10.921879GATB (GLU-ADT SUBUNIT B)OMAT1P013310---
    AT4G29060.10.920875emb2726 (embryo defective 2726)OMAT4P009530-OMAT4P108110-
    AT1G53800.20.913436endonucleaseOMAT1P014910---
    AT3G48110.10.910485EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1)OMAT3P012470---
    AT2G24020.10.907849unknown protein----
    AT1G11870.20.906501SRS (SERYL-TRNA SYNTHETASE)OMAT1P004090---
    AT5G22640.10.902818emb1211 (embryo defective 1211)OMAT5P007630---
    Negatively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    AT1G31470.1-0.802615NFD4 (NUCLEAR FUSION DEFECTIVE 4)OMAT1P109920---
    AT4G24990.1-0.773241ATGP4OMAT4P106750---
    AT4G10810.1-0.753311unknown proteinOMAT4P102150---
    AT4G25230.1-0.750321RIN2 (RPM1 INTERACTING PROTEIN 2)OMAT4P007880---
    AT5G66930.3-0.749796unknown proteinOMAT5P020810---
    AT2G45210.1-0.749701auxin-responsive protein-relatedOMAT2P012640---
    AT1G02890.1-0.743776AAA-type ATPase family proteinOMAT1P100590---
    AT3G32968.1-0.739486transposable element gene----
    AT4G17530.1-0.733483ATRAB1C----
    AT4G38570.1-0.732487PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2)OMAT4P111690---

    Get whole results


    Over-Representation Analysis Result

    p-value <= 4.75e-46:20 terms with high significance
    4.75e-46 < p-value <= 8.76e-06 :With considering multiple testing correction;
    p <= 1.00e-02 / 1142
    8.76e-06 < p-value <= 1.00e-02

    Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
    (Link to PosMed)
    Found on gene annotation
    B5GO:0006520cellular amino acid metabolic process19/2009.034.69e-14-no
    B5GO:0044106cellular amine metabolic process19/2008.361.97e-13-no
    B4GO:0009308amine metabolic process19/2007.591.15e-12-no
    B4GO:0048608reproductive structure development25/2005.134.37e-12-no
    B4GO:0042180cellular ketone metabolic process23/2005.132.89e-11-yes
    B3GO:0003006reproductive developmental process25/2004.546.32e-11-no
    B5GO:0043436oxoacid metabolic process22/2005.001.22e-10-yes
    B4GO:0006082organic acid metabolic process22/2004.981.29e-10-yes
    B4GO:0009793embryonic development ending in seed dormancy16/2006.981.93e-10-no
    B3GO:0009790embryonic development17/2006.442.17e-10-no
    B5GO:0006412translation28/2003.862.27e-10-no
    B3GO:0009791post-embryonic development25/2004.222.94e-10-no
    B3GO:0048316seed development17/2006.243.58e-10-no
    B4GO:0006519cellular amino acid and derivative metabolic process19/2005.474.06e-10-no
    B3GO:0022414reproductive process25/2004.154.31e-10-no
    B5GO:0010154fruit development17/2005.957.62e-10-no
    B5GO:0016070RNA metabolic process29/2003.412.04e-09-no
    B3GO:0044237cellular metabolic process84/2001.782.67e-09-yes
    B4GO:0034641cellular nitrogen compound metabolic process46/2002.368.75e-09-yes
    B3GO:0006807nitrogen compound metabolic process46/2002.321.61e-08-yes
    B4GO:0010467gene expression46/2002.263.56e-081.77E-15no
    B3GO:0044281small molecule metabolic process27/2003.001.01e-07-yes
    B3GO:0048856anatomical structure development26/2002.913.31e-07-no
    B5GO:0044271cellular nitrogen compound biosynthetic process13/2004.915.19e-07-yes
    B4GO:0044249cellular biosynthetic process53/2001.881.15e-06-yes
    B4GO:0019538protein metabolic process46/2001.991.41e-06-no
    B3GO:0009058biosynthetic process54/2001.851.46e-06-yes
    B3GO:0043170macromolecule metabolic process66/2001.711.53e-06-no
    B4GO:0044260cellular macromolecule metabolic process61/2001.732.70e-06-no
    B3GO:0007275multicellular organismal development27/2002.542.78e-06-no
    B5GO:0044267cellular protein metabolic process41/2002.014.49e-06-no
    B5GO:0090304nucleic acid metabolic process32/2002.131.61e-05-no
    B3GO:0044238primary metabolic process75/2001.512.26e-05-yes
    B4GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process33/2001.966.70e-05-no
    B5GO:0034645cellular macromolecule biosynthetic process37/2001.723.81e-04-no
    B4GO:0009059macromolecule biosynthetic process37/2001.714.04e-04-no
    B3GO:0006996organelle organization10/2003.005.80e-04-no
    B4GO:0044283small molecule biosynthetic process11/2002.422.18e-03-no
    C5GO:0009536plastid148/2008.013.15e-1103.64E-21yes
    C4GO:0044444cytoplasmic part157/2004.521.56e-81-yes
    C4GO:0005737cytoplasm160/2004.272.58e-80-yes
    C4GO:0044435plastid part78/20013.711.30e-68-yes
    C4GO:0043231intracellular membrane-bounded organelle159/2003.621.59e-68-yes
    C3GO:0043227membrane-bounded organelle159/2003.621.62e-68-yes
    C3GO:0043229intracellular organelle159/2003.442.87e-65-yes
    C3GO:0044424intracellular part163/2003.202.67e-63-yes
    C5GO:0044434chloroplast part73/20013.181.17e-62-yes
    C3GO:0005622intracellular165/2003.101.19e-62-yes
    C5GO:0009532plastid stroma51/20020.631.71e-53-yes
    C3GO:0044446intracellular organelle part83/2005.793.36e-43-yes
    C3GO:0044422organelle part83/2005.783.59e-43-yes
    C3GO:0044464cell part170/2001.869.55e-32-yes
    C4GO:0009579thylakoid32/20012.853.51e-27-no
    C5GO:0009526plastid envelope31/20011.281.27e-24-no
    C4GO:0031967organelle envelope33/2007.923.63e-21-no
    C3GO:0031975envelope33/2007.923.63e-21-no
    C5GO:0031976plastid thylakoid24/20012.063.37e-20-no
    C4GO:0031984organelle subcompartment24/20011.983.90e-20-no
    C5GO:0055035plastid thylakoid membrane22/20012.703.34e-19-no
    C5GO:0042651thylakoid membrane22/20012.158.99e-19-no
    C4GO:0044436thylakoid part23/20011.151.17e-18-no
    C4GO:0034357photosynthetic membrane22/20011.991.21e-18-no
    C5GO:0005739mitochondrion24/2003.757.04e-09-no
    C3GO:0043228non-membrane-bounded organelle22/2003.693.70e-08-no
    C4GO:0043232intracellular non-membrane-bounded organelle22/2003.693.70e-08-no
    C4GO:0005840ribosome13/2005.073.53e-07-no
    C3GO:0030529ribonucleoprotein complex14/2004.012.66e-06-no
    C3GO:0016020membrane46/2001.681.22e-04-no
    M3GO:0016874ligase activity16/2005.862.75e-09-no
    M5GO:0032555purine ribonucleotide binding29/2002.955.12e-08-no
    M4GO:0032553ribonucleotide binding29/2002.955.12e-08-no
    M3GO:0000166nucleotide binding34/2002.571.15e-07-no
    M4GO:0017076purine nucleotide binding29/2002.791.72e-07-no
    M4GO:0003723RNA binding21/2003.032.02e-060yes
    M3GO:0003735structural constituent of ribosome11/2005.082.14e-06-no
    M5GO:0030554adenyl nucleotide binding22/2002.434.07e-05-no
    M4GO:0001883purine nucleoside binding22/2002.434.07e-05-no
    M3GO:0001882nucleoside binding22/2002.434.23e-05-no
    M5GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides13/2002.921.70e-04-no
    M4GO:0016817hydrolase activity, acting on acid anhydrides13/2002.891.88e-04-no
    M3GO:0003676nucleic acid binding36/2001.524.00e-030yes
    PS5PO:0020038petiole182/2002.394.58e-57-yes
    PS5PO:0020039leaf lamina182/2002.214.48e-51-yes
    PS4PO:0020030cotyledon172/2002.342.50e-484.99E-18yes
    PS5PO:0000013cauline leaf175/2002.275.94e-48-yes
    PS4PO:0009025leaf184/2002.003.41e-45-yes
    PS4PO:0000037shoot apex179/2002.081.56e-44-yes
    PS5PO:0009052pedicel172/2002.122.36e-41-yes
    PS5PO:0009028microsporophyll174/2002.073.32e-41-yes
    PS3PO:0009032petal177/2002.023.93e-41-yes
    PS4PO:0009047stem174/2002.068.57e-41-yes
    PS3PO:0009013meristem170/2002.123.09e-40-yes
    PS3PO:0009031sepal178/2001.931.95e-38-yes
    PS5PO:0009027megasporophyll171/2002.042.99e-38-yes
    PS5PO:0008037seedling174/2001.971.06e-371.16E-17yes
    PS3PO:0006001phyllome184/2001.794.80e-37-yes
    PS5PO:0008034leaf whorl178/2001.895.53e-37-yes
    PS4PO:0008033phyllome whorl178/2001.895.53e-37-yes
    PS4PO:0009026sporophyll174/2001.932.23e-36-yes
    PS3PO:0009010seed180/2001.842.33e-36-yes
    PS4PO:0009009embryo179/2001.852.98e-36-yes
    PS4PO:0009001fruit180/2001.835.48e-36-yes
    PS3PO:0006342infructescence180/2001.835.48e-36-yes
    PS4PO:0000230inflorescence meristem162/2002.093.04e-35-yes
    PS3PO:0009006shoot184/2001.697.54e-33-yes
    PS5PO:0009046flower180/2001.735.22e-32-yes
    PS4PO:0009049inflorescence180/2001.721.37e-31-yes
    PS3PO:0009005root158/2001.761.23e-23-yes
    PS4PO:0000293guard cell51/2004.747.68e-22-yes
    PS4PO:0000351guard mother cell51/2004.729.36e-22-yes
    PS3PO:0000070meristemoid51/2004.711.01e-21-yes
    PS5PO:0006016leaf epidermis51/2004.593.32e-21-yes
    PS5PO:0006035shoot epidermis51/2004.554.52e-21-yes
    PS5PO:0000349epidermal initial51/2004.526.14e-21-yes
    PS4PO:0004011initial cell51/2004.498.14e-21-yes
    PS3PO:0004010meristematic cell51/2004.498.73e-21-yes
    PS3PO:0004013epidermal cell51/2004.287.13e-20-yes
    PS4PO:0005679epidermis51/2004.123.64e-19-yes
    PS3PO:0009014dermal tissue51/2004.123.71e-19-yes
    PS3PO:0020091male gametophyte138/2001.669.00e-16-yes
    PG4PO:00010544 leaf senescence stage177/2002.301.93e-50-yes
    PG3PO:0001050leaf development stages177/2002.302.12e-50-yes
    PG5PO:0001081F mature embryo stage176/2002.216.08e-47-yes
    PG5PO:0001078E expanded cotyledon stage178/2002.144.75e-46-yes
    PG5PO:0007133leaf production178/2002.124.34e-45-yes
    PG4PO:00071121 main shoot growth178/2002.124.50e-45-yes
    PG5PO:0001185C globular stage176/2002.149.50e-45-yes
    PG3PO:0007134A vegetative growth178/2002.101.39e-44-yes
    PG5PO:0004507D bilateral stage176/2002.141.78e-44-yes
    PG4PO:0007631embryo development stages179/2001.992.95e-41-yes
    PG3PO:0001170seed development stages179/2001.986.02e-41-yes
    PG5PO:0007604corolla developmental stages179/2001.819.71e-35-yes
    PG4PO:00076003 floral organ development stages180/2001.771.76e-33-yes
    PG4PO:00076164 anthesis176/2001.813.64e-33-yes
    PG3PO:0007615flower development stages180/2001.721.55e-31-yes
    KW0chloroplast-140/2007.931.86e-1011.97E-17yes
    KW0stroma-35/20018.771.68e-35-yes
    KW0thylakoid-24/20011.271.71e-19-no
    KW0plastid-20/20013.254.88e-183.64E-21no
    KW0envelope-23/20010.061.23e-17-no
    KW0defective-22/2008.996.75e-16-no
    KW0translation-26/2005.259.83e-13-no
    KW0bacterial-15/2009.943.38e-12-yes
    KW0synthetase-14/2009.742.04e-11-no
    KW0ending-15/2008.434.03e-11-no
    KW0embryonic-16/2007.457.06e-11-no
    KW0dormancy-15/2007.921.01e-10-no
    KW0components-13/2008.011.19e-09-no
    KW0ribosome-15/2005.681.20e-08-no
    KW0biogenesis-11/2008.091.44e-08-no
    KW0ribosomal-15/2004.977.62e-08-no
    KW0terminal-43/2002.231.51e-07-no
    KW0development-23/2003.301.54e-072.18E-15no
    KW0mitochondrion-20/2003.651.72e-07-no
    KW0nucleotide-21/2003.304.84e-07-no
    KW0pentatricopeptide-13/2004.481.56e-06-no
    KW0ligase-15/2003.842.27e-06-no
    KW0alpha-21/2002.884.48e-06-no
    KW0conserved-31/2002.294.99e-06-no
    KW0ipr002885-12/2004.285.61e-06-no
    KW0embryo-20/2002.887.21e-06-no
    KW0motif-16/2003.298.86e-06-no
    KW0structural-13/2003.711.33e-05-no
    KW0constituent-11/2003.922.84e-05-no
    KW0biosynthetic-19/2002.663.59e-05-yes
    KW0class-17/2002.843.62e-05-no
    KW0nucleic-16/2002.453.32e-040yes
    KW0synthase-12/2002.735.14e-04-no
    KW0dependent-24/2001.791.96e-032.39E-15yes
    KW0catalytic-19/2001.873.10e-03-no
    KW0membrane-38/2001.438.81e-03-no
    KW0containing-26/2001.568.82e-039.00E-09no
    (*1)[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
    (*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
    (*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
    (*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

    Top Page
label
  • AT3G03710.1
attributionURL
Target_TAIR_Locus
gene_region
seeAlso
hasFile
Relative_ontology_term
ARTADE2_Gene (Ver.20100511)
Tiling_Array_Analysis_Result

AT3G03710.1

Genes with tiling-array support (Annotated)

status_about_related_gene
  • with_OMAT_gene
Correlation_Score
  • 0.676042
label
  • AT3G03710.1
attributionURL
Target_TAIR_Locus
gene_region
seeAlso
Relative_ontology_term
ARTADE2_Gene (Ver.20100511)
Tiling_Array_Analysis_Result