Gene Model | |
Correlation Plot | |
Positively Correlated Genes | ||||||
---|---|---|---|---|---|---|
Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
AT4G38160.2 | 0.949625 | pde191 (pigment defective 191) | OMAT4P013270 | - | - | - |
AT2G25840.2 | 0.939548 | OVA4 (ovule abortion 4) | OMAT2P005470 | - | - | - |
AT5G16715.1 | 0.927328 | EMB2247 (embryo defective 2247) | OMAT5P005840,OMAT5P005845 | [OMAT5P005840]-, [OMAT5P005845]- | - | - |
AT1G48520.1 | 0.921879 | GATB (GLU-ADT SUBUNIT B) | OMAT1P013310 | - | - | - |
AT4G29060.1 | 0.920875 | emb2726 (embryo defective 2726) | OMAT4P009530 | - | OMAT4P108110 | - |
AT1G53800.2 | 0.913436 | endonuclease | OMAT1P014910 | - | - | - |
AT3G48110.1 | 0.910485 | EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) | OMAT3P012470 | - | - | - |
AT2G24020.1 | 0.907849 | unknown protein | - | - | - | - |
AT1G11870.2 | 0.906501 | SRS (SERYL-TRNA SYNTHETASE) | OMAT1P004090 | - | - | - |
AT5G22640.1 | 0.902818 | emb1211 (embryo defective 1211) | OMAT5P007630 | - | - | - |
Negatively Correlated Genes | ||||||
Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
AT1G31470.1 | -0.802615 | NFD4 (NUCLEAR FUSION DEFECTIVE 4) | OMAT1P109920 | - | - | - |
AT4G24990.1 | -0.773241 | ATGP4 | OMAT4P106750 | - | - | - |
AT4G10810.1 | -0.753311 | unknown protein | OMAT4P102150 | - | - | - |
AT4G25230.1 | -0.750321 | RIN2 (RPM1 INTERACTING PROTEIN 2) | OMAT4P007880 | - | - | - |
AT5G66930.3 | -0.749796 | unknown protein | OMAT5P020810 | - | - | - |
AT2G45210.1 | -0.749701 | auxin-responsive protein-related | OMAT2P012640 | - | - | - |
AT1G02890.1 | -0.743776 | AAA-type ATPase family protein | OMAT1P100590 | - | - | - |
AT3G32968.1 | -0.739486 | transposable element gene | - | - | - | - |
AT4G17530.1 | -0.733483 | ATRAB1C | - | - | - | - |
AT4G38570.1 | -0.732487 | PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2) | OMAT4P111690 | - | - | - |
p-value | <= 4.75e-46 | :20 terms with high significance | |
4.75e-46 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
8.76e-06 < | p-value | <= 1.00e-02 |
Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
---|---|---|---|---|---|---|---|---|
B | 5 | GO:0006520 | cellular amino acid metabolic process | 19/200 | 9.03 | 4.69e-14 | - | no |
B | 5 | GO:0044106 | cellular amine metabolic process | 19/200 | 8.36 | 1.97e-13 | - | no |
B | 4 | GO:0009308 | amine metabolic process | 19/200 | 7.59 | 1.15e-12 | - | no |
B | 4 | GO:0048608 | reproductive structure development | 25/200 | 5.13 | 4.37e-12 | - | no |
B | 4 | GO:0042180 | cellular ketone metabolic process | 23/200 | 5.13 | 2.89e-11 | - | yes |
B | 3 | GO:0003006 | reproductive developmental process | 25/200 | 4.54 | 6.32e-11 | - | no |
B | 5 | GO:0043436 | oxoacid metabolic process | 22/200 | 5.00 | 1.22e-10 | - | yes |
B | 4 | GO:0006082 | organic acid metabolic process | 22/200 | 4.98 | 1.29e-10 | - | yes |
B | 4 | GO:0009793 | embryonic development ending in seed dormancy | 16/200 | 6.98 | 1.93e-10 | - | no |
B | 3 | GO:0009790 | embryonic development | 17/200 | 6.44 | 2.17e-10 | - | no |
B | 5 | GO:0006412 | translation | 28/200 | 3.86 | 2.27e-10 | - | no |
B | 3 | GO:0009791 | post-embryonic development | 25/200 | 4.22 | 2.94e-10 | - | no |
B | 3 | GO:0048316 | seed development | 17/200 | 6.24 | 3.58e-10 | - | no |
B | 4 | GO:0006519 | cellular amino acid and derivative metabolic process | 19/200 | 5.47 | 4.06e-10 | - | no |
B | 3 | GO:0022414 | reproductive process | 25/200 | 4.15 | 4.31e-10 | - | no |
B | 5 | GO:0010154 | fruit development | 17/200 | 5.95 | 7.62e-10 | - | no |
B | 5 | GO:0016070 | RNA metabolic process | 29/200 | 3.41 | 2.04e-09 | - | no |
B | 3 | GO:0044237 | cellular metabolic process | 84/200 | 1.78 | 2.67e-09 | - | yes |
B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 46/200 | 2.36 | 8.75e-09 | - | yes |
B | 3 | GO:0006807 | nitrogen compound metabolic process | 46/200 | 2.32 | 1.61e-08 | - | yes |
B | 4 | GO:0010467 | gene expression | 46/200 | 2.26 | 3.56e-08 | 1.77E-15 | no |
B | 3 | GO:0044281 | small molecule metabolic process | 27/200 | 3.00 | 1.01e-07 | - | yes |
B | 3 | GO:0048856 | anatomical structure development | 26/200 | 2.91 | 3.31e-07 | - | no |
B | 5 | GO:0044271 | cellular nitrogen compound biosynthetic process | 13/200 | 4.91 | 5.19e-07 | - | yes |
B | 4 | GO:0044249 | cellular biosynthetic process | 53/200 | 1.88 | 1.15e-06 | - | yes |
B | 4 | GO:0019538 | protein metabolic process | 46/200 | 1.99 | 1.41e-06 | - | no |
B | 3 | GO:0009058 | biosynthetic process | 54/200 | 1.85 | 1.46e-06 | - | yes |
B | 3 | GO:0043170 | macromolecule metabolic process | 66/200 | 1.71 | 1.53e-06 | - | no |
B | 4 | GO:0044260 | cellular macromolecule metabolic process | 61/200 | 1.73 | 2.70e-06 | - | no |
B | 3 | GO:0007275 | multicellular organismal development | 27/200 | 2.54 | 2.78e-06 | - | no |
B | 5 | GO:0044267 | cellular protein metabolic process | 41/200 | 2.01 | 4.49e-06 | - | no |
B | 5 | GO:0090304 | nucleic acid metabolic process | 32/200 | 2.13 | 1.61e-05 | - | no |
B | 3 | GO:0044238 | primary metabolic process | 75/200 | 1.51 | 2.26e-05 | - | yes |
B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 33/200 | 1.96 | 6.70e-05 | - | no |
B | 5 | GO:0034645 | cellular macromolecule biosynthetic process | 37/200 | 1.72 | 3.81e-04 | - | no |
B | 4 | GO:0009059 | macromolecule biosynthetic process | 37/200 | 1.71 | 4.04e-04 | - | no |
B | 3 | GO:0006996 | organelle organization | 10/200 | 3.00 | 5.80e-04 | - | no |
B | 4 | GO:0044283 | small molecule biosynthetic process | 11/200 | 2.42 | 2.18e-03 | - | no |
C | 5 | GO:0009536 | plastid | 148/200 | 8.01 | 3.15e-110 | 3.64E-21 | yes |
C | 4 | GO:0044444 | cytoplasmic part | 157/200 | 4.52 | 1.56e-81 | - | yes |
C | 4 | GO:0005737 | cytoplasm | 160/200 | 4.27 | 2.58e-80 | - | yes |
C | 4 | GO:0044435 | plastid part | 78/200 | 13.71 | 1.30e-68 | - | yes |
C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 159/200 | 3.62 | 1.59e-68 | - | yes |
C | 3 | GO:0043227 | membrane-bounded organelle | 159/200 | 3.62 | 1.62e-68 | - | yes |
C | 3 | GO:0043229 | intracellular organelle | 159/200 | 3.44 | 2.87e-65 | - | yes |
C | 3 | GO:0044424 | intracellular part | 163/200 | 3.20 | 2.67e-63 | - | yes |
C | 5 | GO:0044434 | chloroplast part | 73/200 | 13.18 | 1.17e-62 | - | yes |
C | 3 | GO:0005622 | intracellular | 165/200 | 3.10 | 1.19e-62 | - | yes |
C | 5 | GO:0009532 | plastid stroma | 51/200 | 20.63 | 1.71e-53 | - | yes |
C | 3 | GO:0044446 | intracellular organelle part | 83/200 | 5.79 | 3.36e-43 | - | yes |
C | 3 | GO:0044422 | organelle part | 83/200 | 5.78 | 3.59e-43 | - | yes |
C | 3 | GO:0044464 | cell part | 170/200 | 1.86 | 9.55e-32 | - | yes |
C | 4 | GO:0009579 | thylakoid | 32/200 | 12.85 | 3.51e-27 | - | no |
C | 5 | GO:0009526 | plastid envelope | 31/200 | 11.28 | 1.27e-24 | - | no |
C | 4 | GO:0031967 | organelle envelope | 33/200 | 7.92 | 3.63e-21 | - | no |
C | 3 | GO:0031975 | envelope | 33/200 | 7.92 | 3.63e-21 | - | no |
C | 5 | GO:0031976 | plastid thylakoid | 24/200 | 12.06 | 3.37e-20 | - | no |
C | 4 | GO:0031984 | organelle subcompartment | 24/200 | 11.98 | 3.90e-20 | - | no |
C | 5 | GO:0055035 | plastid thylakoid membrane | 22/200 | 12.70 | 3.34e-19 | - | no |
C | 5 | GO:0042651 | thylakoid membrane | 22/200 | 12.15 | 8.99e-19 | - | no |
C | 4 | GO:0044436 | thylakoid part | 23/200 | 11.15 | 1.17e-18 | - | no |
C | 4 | GO:0034357 | photosynthetic membrane | 22/200 | 11.99 | 1.21e-18 | - | no |
C | 5 | GO:0005739 | mitochondrion | 24/200 | 3.75 | 7.04e-09 | - | no |
C | 3 | GO:0043228 | non-membrane-bounded organelle | 22/200 | 3.69 | 3.70e-08 | - | no |
C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 22/200 | 3.69 | 3.70e-08 | - | no |
C | 4 | GO:0005840 | ribosome | 13/200 | 5.07 | 3.53e-07 | - | no |
C | 3 | GO:0030529 | ribonucleoprotein complex | 14/200 | 4.01 | 2.66e-06 | - | no |
C | 3 | GO:0016020 | membrane | 46/200 | 1.68 | 1.22e-04 | - | no |
M | 3 | GO:0016874 | ligase activity | 16/200 | 5.86 | 2.75e-09 | - | no |
M | 5 | GO:0032555 | purine ribonucleotide binding | 29/200 | 2.95 | 5.12e-08 | - | no |
M | 4 | GO:0032553 | ribonucleotide binding | 29/200 | 2.95 | 5.12e-08 | - | no |
M | 3 | GO:0000166 | nucleotide binding | 34/200 | 2.57 | 1.15e-07 | - | no |
M | 4 | GO:0017076 | purine nucleotide binding | 29/200 | 2.79 | 1.72e-07 | - | no |
M | 4 | GO:0003723 | RNA binding | 21/200 | 3.03 | 2.02e-06 | 0 | yes |
M | 3 | GO:0003735 | structural constituent of ribosome | 11/200 | 5.08 | 2.14e-06 | - | no |
M | 5 | GO:0030554 | adenyl nucleotide binding | 22/200 | 2.43 | 4.07e-05 | - | no |
M | 4 | GO:0001883 | purine nucleoside binding | 22/200 | 2.43 | 4.07e-05 | - | no |
M | 3 | GO:0001882 | nucleoside binding | 22/200 | 2.43 | 4.23e-05 | - | no |
M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 13/200 | 2.92 | 1.70e-04 | - | no |
M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 13/200 | 2.89 | 1.88e-04 | - | no |
M | 3 | GO:0003676 | nucleic acid binding | 36/200 | 1.52 | 4.00e-03 | 0 | yes |
PS | 5 | PO:0020038 | petiole | 182/200 | 2.39 | 4.58e-57 | - | yes |
PS | 5 | PO:0020039 | leaf lamina | 182/200 | 2.21 | 4.48e-51 | - | yes |
PS | 4 | PO:0020030 | cotyledon | 172/200 | 2.34 | 2.50e-48 | 4.99E-18 | yes |
PS | 5 | PO:0000013 | cauline leaf | 175/200 | 2.27 | 5.94e-48 | - | yes |
PS | 4 | PO:0009025 | leaf | 184/200 | 2.00 | 3.41e-45 | - | yes |
PS | 4 | PO:0000037 | shoot apex | 179/200 | 2.08 | 1.56e-44 | - | yes |
PS | 5 | PO:0009052 | pedicel | 172/200 | 2.12 | 2.36e-41 | - | yes |
PS | 5 | PO:0009028 | microsporophyll | 174/200 | 2.07 | 3.32e-41 | - | yes |
PS | 3 | PO:0009032 | petal | 177/200 | 2.02 | 3.93e-41 | - | yes |
PS | 4 | PO:0009047 | stem | 174/200 | 2.06 | 8.57e-41 | - | yes |
PS | 3 | PO:0009013 | meristem | 170/200 | 2.12 | 3.09e-40 | - | yes |
PS | 3 | PO:0009031 | sepal | 178/200 | 1.93 | 1.95e-38 | - | yes |
PS | 5 | PO:0009027 | megasporophyll | 171/200 | 2.04 | 2.99e-38 | - | yes |
PS | 5 | PO:0008037 | seedling | 174/200 | 1.97 | 1.06e-37 | 1.16E-17 | yes |
PS | 3 | PO:0006001 | phyllome | 184/200 | 1.79 | 4.80e-37 | - | yes |
PS | 5 | PO:0008034 | leaf whorl | 178/200 | 1.89 | 5.53e-37 | - | yes |
PS | 4 | PO:0008033 | phyllome whorl | 178/200 | 1.89 | 5.53e-37 | - | yes |
PS | 4 | PO:0009026 | sporophyll | 174/200 | 1.93 | 2.23e-36 | - | yes |
PS | 3 | PO:0009010 | seed | 180/200 | 1.84 | 2.33e-36 | - | yes |
PS | 4 | PO:0009009 | embryo | 179/200 | 1.85 | 2.98e-36 | - | yes |
PS | 4 | PO:0009001 | fruit | 180/200 | 1.83 | 5.48e-36 | - | yes |
PS | 3 | PO:0006342 | infructescence | 180/200 | 1.83 | 5.48e-36 | - | yes |
PS | 4 | PO:0000230 | inflorescence meristem | 162/200 | 2.09 | 3.04e-35 | - | yes |
PS | 3 | PO:0009006 | shoot | 184/200 | 1.69 | 7.54e-33 | - | yes |
PS | 5 | PO:0009046 | flower | 180/200 | 1.73 | 5.22e-32 | - | yes |
PS | 4 | PO:0009049 | inflorescence | 180/200 | 1.72 | 1.37e-31 | - | yes |
PS | 3 | PO:0009005 | root | 158/200 | 1.76 | 1.23e-23 | - | yes |
PS | 4 | PO:0000293 | guard cell | 51/200 | 4.74 | 7.68e-22 | - | yes |
PS | 4 | PO:0000351 | guard mother cell | 51/200 | 4.72 | 9.36e-22 | - | yes |
PS | 3 | PO:0000070 | meristemoid | 51/200 | 4.71 | 1.01e-21 | - | yes |
PS | 5 | PO:0006016 | leaf epidermis | 51/200 | 4.59 | 3.32e-21 | - | yes |
PS | 5 | PO:0006035 | shoot epidermis | 51/200 | 4.55 | 4.52e-21 | - | yes |
PS | 5 | PO:0000349 | epidermal initial | 51/200 | 4.52 | 6.14e-21 | - | yes |
PS | 4 | PO:0004011 | initial cell | 51/200 | 4.49 | 8.14e-21 | - | yes |
PS | 3 | PO:0004010 | meristematic cell | 51/200 | 4.49 | 8.73e-21 | - | yes |
PS | 3 | PO:0004013 | epidermal cell | 51/200 | 4.28 | 7.13e-20 | - | yes |
PS | 4 | PO:0005679 | epidermis | 51/200 | 4.12 | 3.64e-19 | - | yes |
PS | 3 | PO:0009014 | dermal tissue | 51/200 | 4.12 | 3.71e-19 | - | yes |
PS | 3 | PO:0020091 | male gametophyte | 138/200 | 1.66 | 9.00e-16 | - | yes |
PG | 4 | PO:0001054 | 4 leaf senescence stage | 177/200 | 2.30 | 1.93e-50 | - | yes |
PG | 3 | PO:0001050 | leaf development stages | 177/200 | 2.30 | 2.12e-50 | - | yes |
PG | 5 | PO:0001081 | F mature embryo stage | 176/200 | 2.21 | 6.08e-47 | - | yes |
PG | 5 | PO:0001078 | E expanded cotyledon stage | 178/200 | 2.14 | 4.75e-46 | - | yes |
PG | 5 | PO:0007133 | leaf production | 178/200 | 2.12 | 4.34e-45 | - | yes |
PG | 4 | PO:0007112 | 1 main shoot growth | 178/200 | 2.12 | 4.50e-45 | - | yes |
PG | 5 | PO:0001185 | C globular stage | 176/200 | 2.14 | 9.50e-45 | - | yes |
PG | 3 | PO:0007134 | A vegetative growth | 178/200 | 2.10 | 1.39e-44 | - | yes |
PG | 5 | PO:0004507 | D bilateral stage | 176/200 | 2.14 | 1.78e-44 | - | yes |
PG | 4 | PO:0007631 | embryo development stages | 179/200 | 1.99 | 2.95e-41 | - | yes |
PG | 3 | PO:0001170 | seed development stages | 179/200 | 1.98 | 6.02e-41 | - | yes |
PG | 5 | PO:0007604 | corolla developmental stages | 179/200 | 1.81 | 9.71e-35 | - | yes |
PG | 4 | PO:0007600 | 3 floral organ development stages | 180/200 | 1.77 | 1.76e-33 | - | yes |
PG | 4 | PO:0007616 | 4 anthesis | 176/200 | 1.81 | 3.64e-33 | - | yes |
PG | 3 | PO:0007615 | flower development stages | 180/200 | 1.72 | 1.55e-31 | - | yes |
KW | 0 | chloroplast | - | 140/200 | 7.93 | 1.86e-101 | 1.97E-17 | yes |
KW | 0 | stroma | - | 35/200 | 18.77 | 1.68e-35 | - | yes |
KW | 0 | thylakoid | - | 24/200 | 11.27 | 1.71e-19 | - | no |
KW | 0 | plastid | - | 20/200 | 13.25 | 4.88e-18 | 3.64E-21 | no |
KW | 0 | envelope | - | 23/200 | 10.06 | 1.23e-17 | - | no |
KW | 0 | defective | - | 22/200 | 8.99 | 6.75e-16 | - | no |
KW | 0 | translation | - | 26/200 | 5.25 | 9.83e-13 | - | no |
KW | 0 | bacterial | - | 15/200 | 9.94 | 3.38e-12 | - | yes |
KW | 0 | synthetase | - | 14/200 | 9.74 | 2.04e-11 | - | no |
KW | 0 | ending | - | 15/200 | 8.43 | 4.03e-11 | - | no |
KW | 0 | embryonic | - | 16/200 | 7.45 | 7.06e-11 | - | no |
KW | 0 | dormancy | - | 15/200 | 7.92 | 1.01e-10 | - | no |
KW | 0 | components | - | 13/200 | 8.01 | 1.19e-09 | - | no |
KW | 0 | ribosome | - | 15/200 | 5.68 | 1.20e-08 | - | no |
KW | 0 | biogenesis | - | 11/200 | 8.09 | 1.44e-08 | - | no |
KW | 0 | ribosomal | - | 15/200 | 4.97 | 7.62e-08 | - | no |
KW | 0 | terminal | - | 43/200 | 2.23 | 1.51e-07 | - | no |
KW | 0 | development | - | 23/200 | 3.30 | 1.54e-07 | 2.18E-15 | no |
KW | 0 | mitochondrion | - | 20/200 | 3.65 | 1.72e-07 | - | no |
KW | 0 | nucleotide | - | 21/200 | 3.30 | 4.84e-07 | - | no |
KW | 0 | pentatricopeptide | - | 13/200 | 4.48 | 1.56e-06 | - | no |
KW | 0 | ligase | - | 15/200 | 3.84 | 2.27e-06 | - | no |
KW | 0 | alpha | - | 21/200 | 2.88 | 4.48e-06 | - | no |
KW | 0 | conserved | - | 31/200 | 2.29 | 4.99e-06 | - | no |
KW | 0 | ipr002885 | - | 12/200 | 4.28 | 5.61e-06 | - | no |
KW | 0 | embryo | - | 20/200 | 2.88 | 7.21e-06 | - | no |
KW | 0 | motif | - | 16/200 | 3.29 | 8.86e-06 | - | no |
KW | 0 | structural | - | 13/200 | 3.71 | 1.33e-05 | - | no |
KW | 0 | constituent | - | 11/200 | 3.92 | 2.84e-05 | - | no |
KW | 0 | biosynthetic | - | 19/200 | 2.66 | 3.59e-05 | - | yes |
KW | 0 | class | - | 17/200 | 2.84 | 3.62e-05 | - | no |
KW | 0 | nucleic | - | 16/200 | 2.45 | 3.32e-04 | 0 | yes |
KW | 0 | synthase | - | 12/200 | 2.73 | 5.14e-04 | - | no |
KW | 0 | dependent | - | 24/200 | 1.79 | 1.96e-03 | 2.39E-15 | yes |
KW | 0 | catalytic | - | 19/200 | 1.87 | 3.10e-03 | - | no |
KW | 0 | membrane | - | 38/200 | 1.43 | 8.81e-03 | - | no |
KW | 0 | containing | - | 26/200 | 1.56 | 8.82e-03 | 9.00E-09 | no |
(*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
(*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
(*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
(*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)
Gene Model | |
Correlation Plot | |
Positively Correlated Genes | ||||||
---|---|---|---|---|---|---|
Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
AT4G38160.2 | 0.949625 | pde191 (pigment defective 191) | OMAT4P013270 | - | - | - |
AT2G25840.2 | 0.939548 | OVA4 (ovule abortion 4) | OMAT2P005470 | - | - | - |
AT5G16715.1 | 0.927328 | EMB2247 (embryo defective 2247) | OMAT5P005840,OMAT5P005845 | [OMAT5P005840]-, [OMAT5P005845]- | - | - |
AT1G48520.1 | 0.921879 | GATB (GLU-ADT SUBUNIT B) | OMAT1P013310 | - | - | - |
AT4G29060.1 | 0.920875 | emb2726 (embryo defective 2726) | OMAT4P009530 | - | OMAT4P108110 | - |
AT1G53800.2 | 0.913436 | endonuclease | OMAT1P014910 | - | - | - |
AT3G48110.1 | 0.910485 | EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) | OMAT3P012470 | - | - | - |
AT2G24020.1 | 0.907849 | unknown protein | - | - | - | - |
AT1G11870.2 | 0.906501 | SRS (SERYL-TRNA SYNTHETASE) | OMAT1P004090 | - | - | - |
AT5G22640.1 | 0.902818 | emb1211 (embryo defective 1211) | OMAT5P007630 | - | - | - |
Negatively Correlated Genes | ||||||
Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
AT1G31470.1 | -0.802615 | NFD4 (NUCLEAR FUSION DEFECTIVE 4) | OMAT1P109920 | - | - | - |
AT4G24990.1 | -0.773241 | ATGP4 | OMAT4P106750 | - | - | - |
AT4G10810.1 | -0.753311 | unknown protein | OMAT4P102150 | - | - | - |
AT4G25230.1 | -0.750321 | RIN2 (RPM1 INTERACTING PROTEIN 2) | OMAT4P007880 | - | - | - |
AT5G66930.3 | -0.749796 | unknown protein | OMAT5P020810 | - | - | - |
AT2G45210.1 | -0.749701 | auxin-responsive protein-related | OMAT2P012640 | - | - | - |
AT1G02890.1 | -0.743776 | AAA-type ATPase family protein | OMAT1P100590 | - | - | - |
AT3G32968.1 | -0.739486 | transposable element gene | - | - | - | - |
AT4G17530.1 | -0.733483 | ATRAB1C | - | - | - | - |
AT4G38570.1 | -0.732487 | PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2) | OMAT4P111690 | - | - | - |
p-value | <= 4.75e-46 | :20 terms with high significance | |
4.75e-46 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
8.76e-06 < | p-value | <= 1.00e-02 |
Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
---|---|---|---|---|---|---|---|---|
B | 5 | GO:0006520 | cellular amino acid metabolic process | 19/200 | 9.03 | 4.69e-14 | - | no |
B | 5 | GO:0044106 | cellular amine metabolic process | 19/200 | 8.36 | 1.97e-13 | - | no |
B | 4 | GO:0009308 | amine metabolic process | 19/200 | 7.59 | 1.15e-12 | - | no |
B | 4 | GO:0048608 | reproductive structure development | 25/200 | 5.13 | 4.37e-12 | - | no |
B | 4 | GO:0042180 | cellular ketone metabolic process | 23/200 | 5.13 | 2.89e-11 | - | yes |
B | 3 | GO:0003006 | reproductive developmental process | 25/200 | 4.54 | 6.32e-11 | - | no |
B | 5 | GO:0043436 | oxoacid metabolic process | 22/200 | 5.00 | 1.22e-10 | - | yes |
B | 4 | GO:0006082 | organic acid metabolic process | 22/200 | 4.98 | 1.29e-10 | - | yes |
B | 4 | GO:0009793 | embryonic development ending in seed dormancy | 16/200 | 6.98 | 1.93e-10 | - | no |
B | 3 | GO:0009790 | embryonic development | 17/200 | 6.44 | 2.17e-10 | - | no |
B | 5 | GO:0006412 | translation | 28/200 | 3.86 | 2.27e-10 | - | no |
B | 3 | GO:0009791 | post-embryonic development | 25/200 | 4.22 | 2.94e-10 | - | no |
B | 3 | GO:0048316 | seed development | 17/200 | 6.24 | 3.58e-10 | - | no |
B | 4 | GO:0006519 | cellular amino acid and derivative metabolic process | 19/200 | 5.47 | 4.06e-10 | - | no |
B | 3 | GO:0022414 | reproductive process | 25/200 | 4.15 | 4.31e-10 | - | no |
B | 5 | GO:0010154 | fruit development | 17/200 | 5.95 | 7.62e-10 | - | no |
B | 5 | GO:0016070 | RNA metabolic process | 29/200 | 3.41 | 2.04e-09 | - | no |
B | 3 | GO:0044237 | cellular metabolic process | 84/200 | 1.78 | 2.67e-09 | - | yes |
B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 46/200 | 2.36 | 8.75e-09 | - | yes |
B | 3 | GO:0006807 | nitrogen compound metabolic process | 46/200 | 2.32 | 1.61e-08 | - | yes |
B | 4 | GO:0010467 | gene expression | 46/200 | 2.26 | 3.56e-08 | 1.77E-15 | no |
B | 3 | GO:0044281 | small molecule metabolic process | 27/200 | 3.00 | 1.01e-07 | - | yes |
B | 3 | GO:0048856 | anatomical structure development | 26/200 | 2.91 | 3.31e-07 | - | no |
B | 5 | GO:0044271 | cellular nitrogen compound biosynthetic process | 13/200 | 4.91 | 5.19e-07 | - | yes |
B | 4 | GO:0044249 | cellular biosynthetic process | 53/200 | 1.88 | 1.15e-06 | - | yes |
B | 4 | GO:0019538 | protein metabolic process | 46/200 | 1.99 | 1.41e-06 | - | no |
B | 3 | GO:0009058 | biosynthetic process | 54/200 | 1.85 | 1.46e-06 | - | yes |
B | 3 | GO:0043170 | macromolecule metabolic process | 66/200 | 1.71 | 1.53e-06 | - | no |
B | 4 | GO:0044260 | cellular macromolecule metabolic process | 61/200 | 1.73 | 2.70e-06 | - | no |
B | 3 | GO:0007275 | multicellular organismal development | 27/200 | 2.54 | 2.78e-06 | - | no |
B | 5 | GO:0044267 | cellular protein metabolic process | 41/200 | 2.01 | 4.49e-06 | - | no |
B | 5 | GO:0090304 | nucleic acid metabolic process | 32/200 | 2.13 | 1.61e-05 | - | no |
B | 3 | GO:0044238 | primary metabolic process | 75/200 | 1.51 | 2.26e-05 | - | yes |
B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 33/200 | 1.96 | 6.70e-05 | - | no |
B | 5 | GO:0034645 | cellular macromolecule biosynthetic process | 37/200 | 1.72 | 3.81e-04 | - | no |
B | 4 | GO:0009059 | macromolecule biosynthetic process | 37/200 | 1.71 | 4.04e-04 | - | no |
B | 3 | GO:0006996 | organelle organization | 10/200 | 3.00 | 5.80e-04 | - | no |
B | 4 | GO:0044283 | small molecule biosynthetic process | 11/200 | 2.42 | 2.18e-03 | - | no |
C | 5 | GO:0009536 | plastid | 148/200 | 8.01 | 3.15e-110 | 3.64E-21 | yes |
C | 4 | GO:0044444 | cytoplasmic part | 157/200 | 4.52 | 1.56e-81 | - | yes |
C | 4 | GO:0005737 | cytoplasm | 160/200 | 4.27 | 2.58e-80 | - | yes |
C | 4 | GO:0044435 | plastid part | 78/200 | 13.71 | 1.30e-68 | - | yes |
C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 159/200 | 3.62 | 1.59e-68 | - | yes |
C | 3 | GO:0043227 | membrane-bounded organelle | 159/200 | 3.62 | 1.62e-68 | - | yes |
C | 3 | GO:0043229 | intracellular organelle | 159/200 | 3.44 | 2.87e-65 | - | yes |
C | 3 | GO:0044424 | intracellular part | 163/200 | 3.20 | 2.67e-63 | - | yes |
C | 5 | GO:0044434 | chloroplast part | 73/200 | 13.18 | 1.17e-62 | - | yes |
C | 3 | GO:0005622 | intracellular | 165/200 | 3.10 | 1.19e-62 | - | yes |
C | 5 | GO:0009532 | plastid stroma | 51/200 | 20.63 | 1.71e-53 | - | yes |
C | 3 | GO:0044446 | intracellular organelle part | 83/200 | 5.79 | 3.36e-43 | - | yes |
C | 3 | GO:0044422 | organelle part | 83/200 | 5.78 | 3.59e-43 | - | yes |
C | 3 | GO:0044464 | cell part | 170/200 | 1.86 | 9.55e-32 | - | yes |
C | 4 | GO:0009579 | thylakoid | 32/200 | 12.85 | 3.51e-27 | - | no |
C | 5 | GO:0009526 | plastid envelope | 31/200 | 11.28 | 1.27e-24 | - | no |
C | 4 | GO:0031967 | organelle envelope | 33/200 | 7.92 | 3.63e-21 | - | no |
C | 3 | GO:0031975 | envelope | 33/200 | 7.92 | 3.63e-21 | - | no |
C | 5 | GO:0031976 | plastid thylakoid | 24/200 | 12.06 | 3.37e-20 | - | no |
C | 4 | GO:0031984 | organelle subcompartment | 24/200 | 11.98 | 3.90e-20 | - | no |
C | 5 | GO:0055035 | plastid thylakoid membrane | 22/200 | 12.70 | 3.34e-19 | - | no |
C | 5 | GO:0042651 | thylakoid membrane | 22/200 | 12.15 | 8.99e-19 | - | no |
C | 4 | GO:0044436 | thylakoid part | 23/200 | 11.15 | 1.17e-18 | - | no |
C | 4 | GO:0034357 | photosynthetic membrane | 22/200 | 11.99 | 1.21e-18 | - | no |
C | 5 | GO:0005739 | mitochondrion | 24/200 | 3.75 | 7.04e-09 | - | no |
C | 3 | GO:0043228 | non-membrane-bounded organelle | 22/200 | 3.69 | 3.70e-08 | - | no |
C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 22/200 | 3.69 | 3.70e-08 | - | no |
C | 4 | GO:0005840 | ribosome | 13/200 | 5.07 | 3.53e-07 | - | no |
C | 3 | GO:0030529 | ribonucleoprotein complex | 14/200 | 4.01 | 2.66e-06 | - | no |
C | 3 | GO:0016020 | membrane | 46/200 | 1.68 | 1.22e-04 | - | no |
M | 3 | GO:0016874 | ligase activity | 16/200 | 5.86 | 2.75e-09 | - | no |
M | 5 | GO:0032555 | purine ribonucleotide binding | 29/200 | 2.95 | 5.12e-08 | - | no |
M | 4 | GO:0032553 | ribonucleotide binding | 29/200 | 2.95 | 5.12e-08 | - | no |
M | 3 | GO:0000166 | nucleotide binding | 34/200 | 2.57 | 1.15e-07 | - | no |
M | 4 | GO:0017076 | purine nucleotide binding | 29/200 | 2.79 | 1.72e-07 | - | no |
M | 4 | GO:0003723 | RNA binding | 21/200 | 3.03 | 2.02e-06 | 0 | yes |
M | 3 | GO:0003735 | structural constituent of ribosome | 11/200 | 5.08 | 2.14e-06 | - | no |
M | 5 | GO:0030554 | adenyl nucleotide binding | 22/200 | 2.43 | 4.07e-05 | - | no |
M | 4 | GO:0001883 | purine nucleoside binding | 22/200 | 2.43 | 4.07e-05 | - | no |
M | 3 | GO:0001882 | nucleoside binding | 22/200 | 2.43 | 4.23e-05 | - | no |
M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 13/200 | 2.92 | 1.70e-04 | - | no |
M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 13/200 | 2.89 | 1.88e-04 | - | no |
M | 3 | GO:0003676 | nucleic acid binding | 36/200 | 1.52 | 4.00e-03 | 0 | yes |
PS | 5 | PO:0020038 | petiole | 182/200 | 2.39 | 4.58e-57 | - | yes |
PS | 5 | PO:0020039 | leaf lamina | 182/200 | 2.21 | 4.48e-51 | - | yes |
PS | 4 | PO:0020030 | cotyledon | 172/200 | 2.34 | 2.50e-48 | 4.99E-18 | yes |
PS | 5 | PO:0000013 | cauline leaf | 175/200 | 2.27 | 5.94e-48 | - | yes |
PS | 4 | PO:0009025 | leaf | 184/200 | 2.00 | 3.41e-45 | - | yes |
PS | 4 | PO:0000037 | shoot apex | 179/200 | 2.08 | 1.56e-44 | - | yes |
PS | 5 | PO:0009052 | pedicel | 172/200 | 2.12 | 2.36e-41 | - | yes |
PS | 5 | PO:0009028 | microsporophyll | 174/200 | 2.07 | 3.32e-41 | - | yes |
PS | 3 | PO:0009032 | petal | 177/200 | 2.02 | 3.93e-41 | - | yes |
PS | 4 | PO:0009047 | stem | 174/200 | 2.06 | 8.57e-41 | - | yes |
PS | 3 | PO:0009013 | meristem | 170/200 | 2.12 | 3.09e-40 | - | yes |
PS | 3 | PO:0009031 | sepal | 178/200 | 1.93 | 1.95e-38 | - | yes |
PS | 5 | PO:0009027 | megasporophyll | 171/200 | 2.04 | 2.99e-38 | - | yes |
PS | 5 | PO:0008037 | seedling | 174/200 | 1.97 | 1.06e-37 | 1.16E-17 | yes |
PS | 3 | PO:0006001 | phyllome | 184/200 | 1.79 | 4.80e-37 | - | yes |
PS | 5 | PO:0008034 | leaf whorl | 178/200 | 1.89 | 5.53e-37 | - | yes |
PS | 4 | PO:0008033 | phyllome whorl | 178/200 | 1.89 | 5.53e-37 | - | yes |
PS | 4 | PO:0009026 | sporophyll | 174/200 | 1.93 | 2.23e-36 | - | yes |
PS | 3 | PO:0009010 | seed | 180/200 | 1.84 | 2.33e-36 | - | yes |
PS | 4 | PO:0009009 | embryo | 179/200 | 1.85 | 2.98e-36 | - | yes |
PS | 4 | PO:0009001 | fruit | 180/200 | 1.83 | 5.48e-36 | - | yes |
PS | 3 | PO:0006342 | infructescence | 180/200 | 1.83 | 5.48e-36 | - | yes |
PS | 4 | PO:0000230 | inflorescence meristem | 162/200 | 2.09 | 3.04e-35 | - | yes |
PS | 3 | PO:0009006 | shoot | 184/200 | 1.69 | 7.54e-33 | - | yes |
PS | 5 | PO:0009046 | flower | 180/200 | 1.73 | 5.22e-32 | - | yes |
PS | 4 | PO:0009049 | inflorescence | 180/200 | 1.72 | 1.37e-31 | - | yes |
PS | 3 | PO:0009005 | root | 158/200 | 1.76 | 1.23e-23 | - | yes |
PS | 4 | PO:0000293 | guard cell | 51/200 | 4.74 | 7.68e-22 | - | yes |
PS | 4 | PO:0000351 | guard mother cell | 51/200 | 4.72 | 9.36e-22 | - | yes |
PS | 3 | PO:0000070 | meristemoid | 51/200 | 4.71 | 1.01e-21 | - | yes |
PS | 5 | PO:0006016 | leaf epidermis | 51/200 | 4.59 | 3.32e-21 | - | yes |
PS | 5 | PO:0006035 | shoot epidermis | 51/200 | 4.55 | 4.52e-21 | - | yes |
PS | 5 | PO:0000349 | epidermal initial | 51/200 | 4.52 | 6.14e-21 | - | yes |
PS | 4 | PO:0004011 | initial cell | 51/200 | 4.49 | 8.14e-21 | - | yes |
PS | 3 | PO:0004010 | meristematic cell | 51/200 | 4.49 | 8.73e-21 | - | yes |
PS | 3 | PO:0004013 | epidermal cell | 51/200 | 4.28 | 7.13e-20 | - | yes |
PS | 4 | PO:0005679 | epidermis | 51/200 | 4.12 | 3.64e-19 | - | yes |
PS | 3 | PO:0009014 | dermal tissue | 51/200 | 4.12 | 3.71e-19 | - | yes |
PS | 3 | PO:0020091 | male gametophyte | 138/200 | 1.66 | 9.00e-16 | - | yes |
PG | 4 | PO:0001054 | 4 leaf senescence stage | 177/200 | 2.30 | 1.93e-50 | - | yes |
PG | 3 | PO:0001050 | leaf development stages | 177/200 | 2.30 | 2.12e-50 | - | yes |
PG | 5 | PO:0001081 | F mature embryo stage | 176/200 | 2.21 | 6.08e-47 | - | yes |
PG | 5 | PO:0001078 | E expanded cotyledon stage | 178/200 | 2.14 | 4.75e-46 | - | yes |
PG | 5 | PO:0007133 | leaf production | 178/200 | 2.12 | 4.34e-45 | - | yes |
PG | 4 | PO:0007112 | 1 main shoot growth | 178/200 | 2.12 | 4.50e-45 | - | yes |
PG | 5 | PO:0001185 | C globular stage | 176/200 | 2.14 | 9.50e-45 | - | yes |
PG | 3 | PO:0007134 | A vegetative growth | 178/200 | 2.10 | 1.39e-44 | - | yes |
PG | 5 | PO:0004507 | D bilateral stage | 176/200 | 2.14 | 1.78e-44 | - | yes |
PG | 4 | PO:0007631 | embryo development stages | 179/200 | 1.99 | 2.95e-41 | - | yes |
PG | 3 | PO:0001170 | seed development stages | 179/200 | 1.98 | 6.02e-41 | - | yes |
PG | 5 | PO:0007604 | corolla developmental stages | 179/200 | 1.81 | 9.71e-35 | - | yes |
PG | 4 | PO:0007600 | 3 floral organ development stages | 180/200 | 1.77 | 1.76e-33 | - | yes |
PG | 4 | PO:0007616 | 4 anthesis | 176/200 | 1.81 | 3.64e-33 | - | yes |
PG | 3 | PO:0007615 | flower development stages | 180/200 | 1.72 | 1.55e-31 | - | yes |
KW | 0 | chloroplast | - | 140/200 | 7.93 | 1.86e-101 | 1.97E-17 | yes |
KW | 0 | stroma | - | 35/200 | 18.77 | 1.68e-35 | - | yes |
KW | 0 | thylakoid | - | 24/200 | 11.27 | 1.71e-19 | - | no |
KW | 0 | plastid | - | 20/200 | 13.25 | 4.88e-18 | 3.64E-21 | no |
KW | 0 | envelope | - | 23/200 | 10.06 | 1.23e-17 | - | no |
KW | 0 | defective | - | 22/200 | 8.99 | 6.75e-16 | - | no |
KW | 0 | translation | - | 26/200 | 5.25 | 9.83e-13 | - | no |
KW | 0 | bacterial | - | 15/200 | 9.94 | 3.38e-12 | - | yes |
KW | 0 | synthetase | - | 14/200 | 9.74 | 2.04e-11 | - | no |
KW | 0 | ending | - | 15/200 | 8.43 | 4.03e-11 | - | no |
KW | 0 | embryonic | - | 16/200 | 7.45 | 7.06e-11 | - | no |
KW | 0 | dormancy | - | 15/200 | 7.92 | 1.01e-10 | - | no |
KW | 0 | components | - | 13/200 | 8.01 | 1.19e-09 | - | no |
KW | 0 | ribosome | - | 15/200 | 5.68 | 1.20e-08 | - | no |
KW | 0 | biogenesis | - | 11/200 | 8.09 | 1.44e-08 | - | no |
KW | 0 | ribosomal | - | 15/200 | 4.97 | 7.62e-08 | - | no |
KW | 0 | terminal | - | 43/200 | 2.23 | 1.51e-07 | - | no |
KW | 0 | development | - | 23/200 | 3.30 | 1.54e-07 | 2.18E-15 | no |
KW | 0 | mitochondrion | - | 20/200 | 3.65 | 1.72e-07 | - | no |
KW | 0 | nucleotide | - | 21/200 | 3.30 | 4.84e-07 | - | no |
KW | 0 | pentatricopeptide | - | 13/200 | 4.48 | 1.56e-06 | - | no |
KW | 0 | ligase | - | 15/200 | 3.84 | 2.27e-06 | - | no |
KW | 0 | alpha | - | 21/200 | 2.88 | 4.48e-06 | - | no |
KW | 0 | conserved | - | 31/200 | 2.29 | 4.99e-06 | - | no |
KW | 0 | ipr002885 | - | 12/200 | 4.28 | 5.61e-06 | - | no |
KW | 0 | embryo | - | 20/200 | 2.88 | 7.21e-06 | - | no |
KW | 0 | motif | - | 16/200 | 3.29 | 8.86e-06 | - | no |
KW | 0 | structural | - | 13/200 | 3.71 | 1.33e-05 | - | no |
KW | 0 | constituent | - | 11/200 | 3.92 | 2.84e-05 | - | no |
KW | 0 | biosynthetic | - | 19/200 | 2.66 | 3.59e-05 | - | yes |
KW | 0 | class | - | 17/200 | 2.84 | 3.62e-05 | - | no |
KW | 0 | nucleic | - | 16/200 | 2.45 | 3.32e-04 | 0 | yes |
KW | 0 | synthase | - | 12/200 | 2.73 | 5.14e-04 | - | no |
KW | 0 | dependent | - | 24/200 | 1.79 | 1.96e-03 | 2.39E-15 | yes |
KW | 0 | catalytic | - | 19/200 | 1.87 | 3.10e-03 | - | no |
KW | 0 | membrane | - | 38/200 | 1.43 | 8.81e-03 | - | no |
KW | 0 | containing | - | 26/200 | 1.56 | 8.82e-03 | 9.00E-09 | no |
(*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
(*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
(*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
(*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
Genes with tiling-array support (Annotated)