AT4G23375.1http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u422337501000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| ath-MIR845b | 1 | ath-MIR845b | - | - | - | - |
| AT4G02610.1 | 0.860943 | tryptophan synthase, alpha subunit, putative | OMAT4P000995 | - | - | - |
| ath-MIR1888 | 0.858319 | ath-MIR1888 | OMAT5P007330 | - | - | - |
| AT5G54203.1 | 0.856781 | transposable element gene | - | - | - | - |
| AT5G27430.1 | 0.855118 | signal peptidase subunit family protein | - | - | - | - |
| AT1G21720.1 | 0.854815 | PBC1 (PROTEASOME BETA SUBUNIT C1) | - | - | - | - |
| AT5G11810.1 | 0.838276 | unknown protein | OMAT5P004050 | - | - | - |
| AT5G63440.2 | 0.837426 | unknown protein | - | - | - | - |
| AT4G16805.1 | 0.818003 | unknown protein | - | - | - | - |
| AT1G09580.1 | 0.814172 | emp24/gp25L/p24 family protein | OMAT1P003310 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT3G02750.3 | -0.694845 | protein phosphatase 2C family protein / PP2C family protein | OMAT3P100750 | - | - | - |
| AT5G26080.1 | -0.692699 | proline-rich family protein | - | - | - | - |
| AT3G14340.1 | -0.687315 | unknown protein | - | - | OMAT3P104830 | - |
| AT5G22350.1 | -0.686999 | ELM1 (ELONGATED MITOCHONDRIA 1) | OMAT5P106480 | - | - | - |
| AT2G33080.1 | -0.6793 | AtRLP28 (Receptor Like Protein 28) | - | - | - | - |
| AT3G12502.1 | -0.677747 | other RNA | - | - | OMAT3P104090 | - |
| AT3G02070.1 | -0.675518 | OTU-like cysteine protease family protein | - | - | - | - |
| AT2G16018.1 | -0.670864 | unknown protein | OMAT2P101910 | - | - | - |
| AT3G01202.1 | -0.655731 | other RNA | - | - | OMAT3P100100 | - |
| AT5G06440.2 | -0.653741 | unknown protein | - | - | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.97e-10 | :20 terms with high significance | |
| 1.97e-10 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0006508 | proteolysis | 12/200 | 2.86 | 3.33e-04 | - | no |
| B | 3 | GO:0009056 | catabolic process | 10/200 | 2.10 | 8.89e-03 | - | no |
| C | 3 | GO:0043234 | protein complex | 20/200 | 3.06 | 2.89e-06 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 16/200 | 2.50 | 2.60e-04 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 53/200 | 1.53 | 4.30e-04 | - | no |
| C | 4 | GO:0005618 | cell wall | 10/200 | 3.01 | 5.55e-04 | - | no |
| C | 3 | GO:0030312 | external encapsulating structure | 10/200 | 2.99 | 5.89e-04 | - | no |
| C | 3 | GO:0005622 | intracellular | 72/200 | 1.35 | 1.32e-03 | - | no |
| C | 3 | GO:0044424 | intracellular part | 69/200 | 1.35 | 1.70e-03 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 63/200 | 1.36 | 2.39e-03 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 53/200 | 1.42 | 2.53e-03 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 13/200 | 2.18 | 2.83e-03 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 13/200 | 2.18 | 2.83e-03 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 23/200 | 1.60 | 9.19e-03 | - | no |
| C | 3 | GO:0044422 | organelle part | 23/200 | 1.60 | 9.27e-03 | - | no |
| M | 4 | GO:0008233 | peptidase activity | 11/200 | 10.33 | 9.11e-10 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 25/200 | 1.60 | 7.24e-03 | - | no |
| PS | 5 | PO:0009052 | pedicel | 133/200 | 1.64 | 4.23e-14 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 126/200 | 1.63 | 8.77e-13 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 126/200 | 1.62 | 1.41e-12 | - | no |
| PS | 5 | PO:0020038 | petiole | 124/200 | 1.63 | 2.05e-12 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 131/200 | 1.56 | 5.69e-12 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 133/200 | 1.55 | 6.18e-12 | - | no |
| PS | 3 | PO:0009013 | meristem | 127/200 | 1.58 | 8.01e-12 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 119/200 | 1.62 | 1.75e-11 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 126/200 | 1.53 | 1.58e-10 | - | no |
| PS | 3 | PO:0009032 | petal | 131/200 | 1.49 | 1.97e-10 | - | no |
| PS | 3 | PO:0009031 | sepal | 135/200 | 1.46 | 3.55e-10 | - | no |
| PS | 4 | PO:0009047 | stem | 127/200 | 1.51 | 3.81e-10 | - | no |
| PS | 4 | PO:0009025 | leaf | 134/200 | 1.46 | 6.13e-10 | - | no |
| PS | 3 | PO:0009005 | root | 132/200 | 1.47 | 6.57e-10 | - | no |
| PS | 5 | PO:0008037 | seedling | 130/200 | 1.47 | 8.61e-10 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 125/200 | 1.49 | 1.44e-09 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 131/200 | 1.46 | 1.63e-09 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 135/200 | 1.43 | 1.93e-09 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 135/200 | 1.43 | 1.93e-09 | - | no |
| PS | 3 | PO:0009010 | seed | 138/200 | 1.41 | 2.72e-09 | - | no |
| PS | 4 | PO:0009001 | fruit | 138/200 | 1.40 | 4.17e-09 | - | no |
| PS | 3 | PO:0006342 | infructescence | 138/200 | 1.40 | 4.17e-09 | - | no |
| PS | 4 | PO:0009009 | embryo | 136/200 | 1.41 | 5.67e-09 | - | no |
| PS | 3 | PO:0006001 | phyllome | 141/200 | 1.37 | 9.76e-09 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 120/200 | 1.45 | 4.22e-08 | - | no |
| PS | 5 | PO:0009046 | flower | 139/200 | 1.34 | 1.60e-07 | - | no |
| PS | 3 | PO:0009006 | shoot | 143/200 | 1.32 | 1.94e-07 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 139/200 | 1.33 | 2.53e-07 | - | no |
| PS | 4 | PO:0000293 | guard cell | 20/200 | 1.86 | 2.70e-03 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 20/200 | 1.85 | 2.84e-03 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 20/200 | 1.85 | 2.90e-03 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 20/200 | 1.80 | 3.95e-03 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 21/200 | 1.76 | 4.21e-03 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 20/200 | 1.79 | 4.28e-03 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 20/200 | 1.77 | 4.63e-03 | - | no |
| PS | 4 | PO:0004011 | initial cell | 20/200 | 1.76 | 4.98e-03 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 20/200 | 1.76 | 5.06e-03 | - | no |
| PS | 4 | PO:0005679 | epidermis | 21/200 | 1.70 | 6.49e-03 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 21/200 | 1.70 | 6.53e-03 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 134/200 | 1.68 | 1.83e-15 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 136/200 | 1.64 | 9.90e-15 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 133/200 | 1.61 | 1.36e-13 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 127/200 | 1.65 | 2.14e-13 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 127/200 | 1.65 | 2.24e-13 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 131/200 | 1.60 | 8.04e-13 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 138/200 | 1.53 | 2.08e-12 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 138/200 | 1.53 | 3.08e-12 | - | no |
| PG | 5 | PO:0007133 | leaf production | 128/200 | 1.52 | 1.21e-10 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 128/200 | 1.52 | 1.24e-10 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 128/200 | 1.51 | 2.12e-10 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 143/200 | 1.40 | 9.41e-10 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 139/200 | 1.41 | 2.37e-09 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 143/200 | 1.37 | 1.02e-08 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 134/200 | 1.38 | 3.99e-08 | - | no |
| PG | 5 | PO:0007605 | androecium developmental stages | 41/200 | 1.40 | 9.30e-03 | - | no |
| KW | 0 | subunit | - | 22/200 | 3.00 | 1.38e-06 | - | no |
| KW | 0 | complex | - | 24/200 | 2.83 | 1.39e-06 | - | no |
| KW | 0 | peptidase | - | 15/200 | 3.77 | 2.92e-06 | - | no |
| KW | 0 | molecular_function | - | 70/200 | 1.39 | 7.87e-04 | - | no |
| KW | 0 | carbohydrate | - | 10/200 | 2.55 | 2.10e-03 | - | no |
| KW | 0 | alpha | - | 15/200 | 2.06 | 2.86e-03 | - | no |
| KW | 0 | mitochondrion | - | 12/200 | 2.19 | 3.68e-03 | - | no |
| KW | 0 | process | - | 32/200 | 1.56 | 4.10e-03 | - | no |
| KW | 0 | biological_process | - | 76/200 | 1.27 | 5.51e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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