ARTADE2 予測遺伝子モデル データベースTAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

AT4G30750.1
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s2ria227u423075001000i

AT4G30750.1(↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
AT1G62840.10.925429unknown proteinOMAT1P017220---
AT4G00355.30.849661unknown proteinOMAT4P000140---
AT4G14716.10.833128ATARD1 (ACIREDUCTONE DIOXYGENASE 1)OMAT4P103370---
AT3G22260.20.831957OTU-like cysteine protease family protein----
AT1G27170.10.818786ATP binding / protein binding / transmembrane receptor----
AT4G29860.10.806944EMB2757 (EMBRYO DEFECTIVE 2757)OMAT4P108350---
AT1G77920.10.805999bZIP family transcription factorOMAT1P023000---
AT5G63640.10.803796VHS domain-containing protein / GAT domain-containing proteinOMAT5P019500---
AT5G55560.10.801561protein kinase family proteinOMAT5P114520---
AT1G76060.10.798848EMB1793 (EMBRYO DEFECTIVE 1793)----
Negatively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
AT5G10620.1-0.739483FUNCTIONS IN: molecular_function unknown----
AT5G67070.1-0.738348RALFL34 (ralf-like 34)OMAT5P020860---
AT1G04730.1-0.735092AAA-type ATPase family protein----
AT5G43870.1-0.730262phosphoinositide bindingOMAT5P110650---
AT3G09800.1-0.729993protein binding----
AT3G17350.1-0.728835unknown proteinOMAT3P006500---
AT1G67830.1-0.727078ATFXG1 (alpha-fucosidase 1)OMAT1P116850---
AT4G25050.1-0.725183ACP4 (acyl carrier protein 4)OMAT4P007800-OMAT4P106790-
AT4G17600.1-0.724803LIL3:1OMAT4P005210-OMAT4P104380-
AT2G35500.1-0.724507shikimate kinase-relatedOMAT2P008870---

Get whole results

Over-Representation Analysis Result

p-value <= 1.19e-07:20 terms with high significance
1.19e-07 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
(Link to PosMed)		Found on gene annotation
PS4PO:0000230inflorescence meristem131/2001.696.47e-15-no
PS3PO:0009013meristem132/2001.644.35e-14-no
PS4PO:0009047stem134/2001.593.91e-13-no
PS5PO:0009028microsporophyll128/2001.539.47e-11-no
PS3PO:0020091male gametophyte125/2001.516.27e-10-no
PS4PO:0009026sporophyll130/2001.443.88e-09-no
PS4PO:0020030cotyledon112/2001.539.24e-09-no
PS5PO:0000013cauline leaf116/2001.509.38e-09-no
PS5PO:0009027megasporophyll121/2001.444.38e-08-no
PS3PO:0009005root127/2001.414.57e-08-no
PS5PO:0009052pedicel117/2001.441.19e-07-no
PS3PO:0009006shoot143/2001.321.94e-07-no
PS5PO:0008037seedling123/2001.392.65e-07-no
PS4PO:0009025leaf126/2001.374.36e-07-no
PS4PO:0009049inflorescence138/2001.325.42e-07-no
PS3PO:0009032petal121/2001.387.24e-07-no
PS3PO:0009031sepal125/2001.351.20e-06-no
PS4PO:0006345pollen tube54/2001.851.48e-06-no
PS5PO:0009046flower136/2001.311.52e-06-no
PS3PO:0000084sperm cell58/2001.791.82e-06-no
PS3PO:0020097generative cell58/2001.791.82e-06-no
PS4PO:0009001fruit130/2001.322.20e-06-no
PS3PO:0006342infructescence130/2001.322.20e-06-no
PS5PO:0020039leaf lamina114/2001.382.37e-06-no
PS3PO:0009010seed129/2001.323.11e-06-no
PS4PO:0000037shoot apex116/2001.357.28e-06-no
PS3PO:0006001phyllome132/2001.298.93e-06-no
PS4PO:0009009embryo126/2001.301.04e-05-no
PS5PO:0020038petiole105/2001.381.20e-05-no
PS5PO:0008034leaf whorl123/2001.301.63e-05-no
PS4PO:0008033phyllome whorl123/2001.301.63e-05-no
PG4PO:00076003 floral organ development stages141/2001.385.67e-09-no
PG5PO:0007133leaf production123/2001.469.92e-09-no
PG4PO:00071121 main shoot growth123/2001.461.01e-08-no
PG3PO:0007134A vegetative growth123/2001.451.63e-08-no
PG4PO:00010544 leaf senescence stage114/2001.483.56e-08-no
PG3PO:0001050leaf development stages114/2001.483.68e-08-no
PG3PO:0007615flower development stages141/2001.355.47e-08-no
PG5PO:0007604corolla developmental stages135/2001.376.92e-08-no
PG5PO:0001185C globular stage118/2001.449.96e-08-no
PG5PO:0001078E expanded cotyledon stage118/2001.422.08e-07-no
PG5PO:0001081F mature embryo stage114/2001.432.90e-07-no
PG4PO:0007631embryo development stages124/2001.384.73e-07-no
PG5PO:0004507D bilateral stage116/2001.415.62e-07-no
PG3PO:0001170seed development stages124/2001.376.28e-07-no
PG5PO:0007605androecium developmental stages53/2001.813.91e-06-no
PG4PO:00076164 anthesis127/2001.316.77e-06-no
KW0mediated-10/2002.839.28e-04-no
KW0cellular_component-66/2001.352.21e-03-yes
KW0molecular_function-66/2001.315.43e-03-yes
KW0biological_process-75/2001.258.35e-03-yes
(*1)[PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
Top Page

AT4G30750.1

TAIR_gene_model (on ARTADE2DB) (ver. TAIR9)

status_about_related_gene
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s43i
  • without_OMAT_gene
Correlation_Score
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s9i
  • 0.59345
description
http://purl.org/dc/elements/1.1/description
  • AT4G30750.1(↑ Click "Links", if this line appears at the beginning.)

    Other supporting information

    Gene Model

    Correlation Plot


    Expression profile (Values are plotted in Log(2) values.)

    Genes with related expresssion profiles.
    Positively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    AT1G62840.10.925429unknown proteinOMAT1P017220---
    AT4G00355.30.849661unknown proteinOMAT4P000140---
    AT4G14716.10.833128ATARD1 (ACIREDUCTONE DIOXYGENASE 1)OMAT4P103370---
    AT3G22260.20.831957OTU-like cysteine protease family protein----
    AT1G27170.10.818786ATP binding / protein binding / transmembrane receptor----
    AT4G29860.10.806944EMB2757 (EMBRYO DEFECTIVE 2757)OMAT4P108350---
    AT1G77920.10.805999bZIP family transcription factorOMAT1P023000---
    AT5G63640.10.803796VHS domain-containing protein / GAT domain-containing proteinOMAT5P019500---
    AT5G55560.10.801561protein kinase family proteinOMAT5P114520---
    AT1G76060.10.798848EMB1793 (EMBRYO DEFECTIVE 1793)----
    Negatively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    AT5G10620.1-0.739483FUNCTIONS IN: molecular_function unknown----
    AT5G67070.1-0.738348RALFL34 (ralf-like 34)OMAT5P020860---
    AT1G04730.1-0.735092AAA-type ATPase family protein----
    AT5G43870.1-0.730262phosphoinositide bindingOMAT5P110650---
    AT3G09800.1-0.729993protein binding----
    AT3G17350.1-0.728835unknown proteinOMAT3P006500---
    AT1G67830.1-0.727078ATFXG1 (alpha-fucosidase 1)OMAT1P116850---
    AT4G25050.1-0.725183ACP4 (acyl carrier protein 4)OMAT4P007800-OMAT4P106790-
    AT4G17600.1-0.724803LIL3:1OMAT4P005210-OMAT4P104380-
    AT2G35500.1-0.724507shikimate kinase-relatedOMAT2P008870---

    Get whole results

    Over-Representation Analysis Result

    p-value <= 1.19e-07:20 terms with high significance
    1.19e-07 < p-value <= 8.76e-06 :With considering multiple testing correction;
    p <= 1.00e-02 / 1142
    8.76e-06 < p-value <= 1.00e-02

    Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
    (Link to PosMed)    		Found on gene annotation
    PS4PO:0000230inflorescence meristem131/2001.696.47e-15-no
    PS3PO:0009013meristem132/2001.644.35e-14-no
    PS4PO:0009047stem134/2001.593.91e-13-no
    PS5PO:0009028microsporophyll128/2001.539.47e-11-no
    PS3PO:0020091male gametophyte125/2001.516.27e-10-no
    PS4PO:0009026sporophyll130/2001.443.88e-09-no
    PS4PO:0020030cotyledon112/2001.539.24e-09-no
    PS5PO:0000013cauline leaf116/2001.509.38e-09-no
    PS5PO:0009027megasporophyll121/2001.444.38e-08-no
    PS3PO:0009005root127/2001.414.57e-08-no
    PS5PO:0009052pedicel117/2001.441.19e-07-no
    PS3PO:0009006shoot143/2001.321.94e-07-no
    PS5PO:0008037seedling123/2001.392.65e-07-no
    PS4PO:0009025leaf126/2001.374.36e-07-no
    PS4PO:0009049inflorescence138/2001.325.42e-07-no
    PS3PO:0009032petal121/2001.387.24e-07-no
    PS3PO:0009031sepal125/2001.351.20e-06-no
    PS4PO:0006345pollen tube54/2001.851.48e-06-no
    PS5PO:0009046flower136/2001.311.52e-06-no
    PS3PO:0000084sperm cell58/2001.791.82e-06-no
    PS3PO:0020097generative cell58/2001.791.82e-06-no
    PS4PO:0009001fruit130/2001.322.20e-06-no
    PS3PO:0006342infructescence130/2001.322.20e-06-no
    PS5PO:0020039leaf lamina114/2001.382.37e-06-no
    PS3PO:0009010seed129/2001.323.11e-06-no
    PS4PO:0000037shoot apex116/2001.357.28e-06-no
    PS3PO:0006001phyllome132/2001.298.93e-06-no
    PS4PO:0009009embryo126/2001.301.04e-05-no
    PS5PO:0020038petiole105/2001.381.20e-05-no
    PS5PO:0008034leaf whorl123/2001.301.63e-05-no
    PS4PO:0008033phyllome whorl123/2001.301.63e-05-no
    PG4PO:00076003 floral organ development stages141/2001.385.67e-09-no
    PG5PO:0007133leaf production123/2001.469.92e-09-no
    PG4PO:00071121 main shoot growth123/2001.461.01e-08-no
    PG3PO:0007134A vegetative growth123/2001.451.63e-08-no
    PG4PO:00010544 leaf senescence stage114/2001.483.56e-08-no
    PG3PO:0001050leaf development stages114/2001.483.68e-08-no
    PG3PO:0007615flower development stages141/2001.355.47e-08-no
    PG5PO:0007604corolla developmental stages135/2001.376.92e-08-no
    PG5PO:0001185C globular stage118/2001.449.96e-08-no
    PG5PO:0001078E expanded cotyledon stage118/2001.422.08e-07-no
    PG5PO:0001081F mature embryo stage114/2001.432.90e-07-no
    PG4PO:0007631embryo development stages124/2001.384.73e-07-no
    PG5PO:0004507D bilateral stage116/2001.415.62e-07-no
    PG3PO:0001170seed development stages124/2001.376.28e-07-no
    PG5PO:0007605androecium developmental stages53/2001.813.91e-06-no
    PG4PO:00076164 anthesis127/2001.316.77e-06-no
    KW0mediated-10/2002.839.28e-04-no
    KW0cellular_component-66/2001.352.21e-03-yes
    KW0molecular_function-66/2001.315.43e-03-yes
    KW0biological_process-75/2001.258.35e-03-yes
    (*1)[PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
    (*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
    (*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
    (*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
    Top Page
label
http://www.w3.org/2000/01/rdf-schema#label
  • AT4G30750.1
attributionURL
http://creativecommons.org/ns#attributionURL
Target_TAIR_Locus
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i
gene_region
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s6i
seeAlso
http://www.w3.org/2000/01/rdf-schema#seeAlso
hasFile
http://metadb.riken.jp/meta/1.0/hasFile
Tiling_Array_Analysis_Result
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s1i
Relative_ontology_term
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s40i