InterProInterPro Protein Domain record

RNA polymerase sigma-B type
http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u14288i

RNA polymerase sigma-B type

InterPro Protein Domain record

description
  • <p>The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme [<cite idref="PUB00000061"/>]. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes.</p> <p> With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [<cite idref="PUB00004340"/>, <cite idref="PUB00002181"/>]. </p><p>This entry represents the sigma factor, sigmaB. It is restricted to certain species within the order Bacillales including <taxon tax_id="1280">Staphylococcus aureus</taxon> [<cite idref="PUB00034423"/>], <taxon tax_id="1639">Listeria monocytogenes</taxon> [<cite idref="PUB00034424"/>] and <taxon tax_id="226900">Bacillus cereus</taxon> (strain ATCC 14579 / DSM 31) [<cite idref="PUB00034425"/>].</p>
label
  • RNA polymerase sigma-B type
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InterPro Protein Domain record