Elongator protein 3/MiaB/NifB

http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u6638i

Elongator protein 3/MiaB/NifB

InterPro Protein Domain record

description

http://metadb.riken.jp/db/SciNetS_rib124i/prib124u1i

• <p>This domain is found in MoaA, NifB, PqqE, coproporphyrinogenIII oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongatorsubunit, Elp-3. Some members of the family are methyltransferases [<cite idref="PUB00010539"/>].</p>

label

http://www.w3.org/2000/01/rdf-schema#label

• Elongator protein 3/MiaB/NifB

attributionURL

http://creativecommons.org/ns#attributionURL

• http://www.ebi.ac.uk/interpro/ISearch?query=IPR006638

signatures_SMART

http://metadb.riken.jp/db/SciNetS_rib124i/prib124s5i

• Elp3
  http://metadb.riken.jp/db/SciNetS_ria95i/cria95u1ria95u729i

type

http://metadb.riken.jp/db/SciNetS_rib124i/prib124u2i

• Domain
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124u1rib124u4i

seeAlso

http://www.w3.org/2000/01/rdf-schema#seeAlso

• http://database.riken.jp/sw/item/crib124s1rib124u6638i

children

http://metadb.riken.jp/db/SciNetS_rib124i/prib124s1i

• Radical SAM, alpha/beta horseshoe
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u23404i

contains

http://metadb.riken.jp/db/SciNetS_rib124i/prib124s4i

• Methylthiotransferase, conserved site
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u20612i
• MoaA/nifB/pqqE, iron-sulphur binding, conserved site
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u385i

PDB_structure

http://metadb.riken.jp/db/SciNetS_rib124i/prib124s6i

• 2QGQ
  http://metadb.riken.jp/db/SciNetS_ria1i/cria1u1ria1u48119i
• 1TV7
  http://metadb.riken.jp/db/SciNetS_ria1i/cria1u1ria1u28093i
• 1OLT
  http://metadb.riken.jp/db/SciNetS_ria1i/cria1u1ria1u20377i
• 2FB3
  http://metadb.riken.jp/db/SciNetS_ria1i/cria1u1ria1u41552i
• 1R30
  http://metadb.riken.jp/db/SciNetS_ria1i/cria1u1ria1u24210i
• 1TV8
  http://metadb.riken.jp/db/SciNetS_ria1i/cria1u1ria1u28094i

InterPro Protein Domain record

http://metadb.riken.jp/db/SciNetS_rib124i/prib124s4i

• Pyruvate-formate lyase-activating enzyme, predicted
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u16431i
• Hopanoid biosynthesis associated radical SAM protein HpnJ
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u17834i
• Radical SAM coenzyme PQQ biosynthesis protein E/heme D1 biosynthesis NirJ
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u17200i
• Lysine-2,3-aminomutase
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u22459i
• Molybdenum cofactor biosynthesis protein A
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u13483i
• Menaquinone biosynthesis, SCO4550
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u22431i
• Hopanoid biosynthesis associated radical SAM protein HpnH
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u17833i
• Histone acetyltransferase ELP3
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u5910i
• Methylthiotransferase
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u5839i
• Biotin synthase
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u2684i
• Ribosomal RNA large subunit methyltransferase RlmN;
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u4383i
• FO synthase, subunit 1
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u19939i
• Coproporphyrinogen III oxidase, oxygen-independent, HemN
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u4558i
• Aldolase-type TIM barrel
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u13785i
• Molybdenum cofactor biosynthesis protein A, archaea
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u13485i
• Radical SAM enzyme, MSMEG0568
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u16779i
• Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u11772i
• Ribosomal protein S12 methylthiotransferase RimO
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u5840i
• Predicted Fe-S oxidoreductase, NifB/MoaA-like family, euryarchaeota type
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u14494i
• Conserved hypothetical protein CHP01212
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u5911i
• tRNA-i(6)A37 modification enzyme MiaB
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u6463i
• Putative methanogenesis marker protein 10
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u17672i
• MiaB-like tRNA modifying enzyme
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u6467i
• Lysine-2,3-aminomutase-related
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u22447i
• Complex F420, CofH
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u19940i
• MiaB-like tRNA modifying enzyme, archaeal-type
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u6466i
• Coenzyme PQQ biosynthesis protein E, bacteria
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u11843i
• Conserved hypothetical protein CHP01210
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u5909i

InterPro Protein Domain record

http://metadb.riken.jp/db/SciNetS_rib124i/prib124s1i

• Radical SAM
  http://metadb.riken.jp/db/SciNetS_rib124i/crib124s1rib124u7197i

Os_RAPDB_Locus

http://metadb.riken.jp/db/SciNetS_rib109i/prib109u2i

• Os12g0507000
  http://metadb.riken.jp/db/SciNetS_rib109i/crib109s1rib109u120000507000i
• Os12g0270100
  http://metadb.riken.jp/db/SciNetS_rib109i/crib109s1rib109u120000270100i
• Os02g0258900
  http://metadb.riken.jp/db/SciNetS_rib109i/crib109s1rib109u20000258900i
• Os01g0973400
  http://metadb.riken.jp/db/SciNetS_rib109i/crib109s1rib109u10000973400i
• Os04g0434300
  http://metadb.riken.jp/db/SciNetS_rib109i/crib109s1rib109u40000434300i
• Os04g0484900
  http://metadb.riken.jp/db/SciNetS_rib109i/crib109s1rib109u40000484900i
• Os01g0769100
  http://metadb.riken.jp/db/SciNetS_rib109i/crib109s1rib109u10000769100i
• Os04g0455800
  http://metadb.riken.jp/db/SciNetS_rib109i/crib109s1rib109u40000455800i
• Os08g0540100
  http://metadb.riken.jp/db/SciNetS_rib109i/crib109s1rib109u80000540100i
• Os11g0592800
  http://metadb.riken.jp/db/SciNetS_rib109i/crib109s1rib109u110000592800i
• Os05g0511500
  http://metadb.riken.jp/db/SciNetS_rib109i/crib109s1rib109u50000511500i