CD00128

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD00128

CD00128

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• U2af2

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
• splicing factor U2AF 65 kDa subunit
• U2 auxiliary factor 65 kDa subunit
• U2 snRNP auxiliary factor large subunit
• U2 small nuclear ribonucleoprotein auxiliary factor (U2AF), 65 kDa

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• 65kDa

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/22185

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
  http://metadb.riken.jp/db/mgi_rdf/MGI:98886

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_001205231
• https://www.ncbi.nlm.nih.gov/nuccore/NM_133671

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000030435

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.360389

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=191318

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Adrienne E. McKee, et.al., A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain., BMC developmental biology, 2005, 5
  http://rdf.ncbi.nlm.nih.gov/pubmed/16033648
• Doug. Stryke, et.al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells., Nucleic acids research, 2003, 31
  http://rdf.ncbi.nlm.nih.gov/pubmed/12520002
• P D. Zamore, et.al., Cloning and domain structure of the mammalian splicing factor U2AF., Nature, 1992, 355
  http://rdf.ncbi.nlm.nih.gov/pubmed/1538748
• R C. Davies, et.al., WT1 interacts with the splicing factor U2AF65 in an isoform-dependent manner and can be incorporated into spliceosomes., Genes & development, 1998, 12
  http://rdf.ncbi.nlm.nih.gov/pubmed/9784496
• Teresa R. Pacheco, et.al., Diversity of vertebrate splicing factor U2AF35: identification of alternatively spliced U2AF1 mRNAS., The Journal of biological chemistry, 2004, 279
  http://rdf.ncbi.nlm.nih.gov/pubmed/15096518
• Jes-Niels. Boeckel, et.al., Jumonji domain-containing protein 6 (Jmjd6) is required for angiogenic sprouting and regulates splicing of VEGF-receptor 1., Proceedings of the National Academy of Sciences of the United States of America, 2011, 108
  http://rdf.ncbi.nlm.nih.gov/pubmed/21300889
• A. Sailer, et.al., Cloning and sequencing of the murine homologue of the human splicing factor U2AF65., Nucleic acids research, 1992, 20
  http://rdf.ncbi.nlm.nih.gov/pubmed/1594454
• C L. Kielkopf, et.al., A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer., Cell, 2001, 106
  http://rdf.ncbi.nlm.nih.gov/pubmed/11551507
• http://rdf.ncbi.nlm.nih.gov/pubmed/19540372
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• nuclear speck
  http://purl.obolibrary.org/obo/GO_0016607
• RNA binding
  http://purl.obolibrary.org/obo/GO_0003723
• nucleotide binding
  http://purl.obolibrary.org/obo/GO_0000166
• negative regulation of mRNA splicing, via spliceosome
  http://purl.obolibrary.org/obo/GO_0048025
• http://purl.obolibrary.org/obo/GO_1990904
• enzyme binding
  http://purl.obolibrary.org/obo/GO_0019899
• mRNA processing
  http://purl.obolibrary.org/obo/GO_0006397
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634
• RNA splicing
  http://purl.obolibrary.org/obo/GO_0008380
• protein binding
  http://purl.obolibrary.org/obo/GO_0005515
• nucleic acid binding
  http://purl.obolibrary.org/obo/GO_0003676
• spliceosomal complex
  http://purl.obolibrary.org/obo/GO_0005681
• C2H2 zinc finger domain binding
  http://purl.obolibrary.org/obo/GO_0070742

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map03040

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Spliceosome