CD01400

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD01400

CD01400

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Lims1

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• LIM and senescent cell antigen-like domains 1

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• LIM and senescent cell antigen-like domains 1
• LIM and senescent cell antigen-like-containing domain protein 1
• particularly interesting new Cys-His protein 1

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• AI507642
• 4921524A02Rik
• Lims1l
• PINCH
• AU021743
• 2310016J22Rik
• PINCH1
• C430041B13Rik
• AW551584

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/110829

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• LIM and senescent cell antigen-like domains 1
  http://metadb.riken.jp/db/mgi_rdf/MGI:1195263

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_026148
• https://www.ncbi.nlm.nih.gov/nuccore/NM_201242
• https://www.ncbi.nlm.nih.gov/nuccore/NM_001193303

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000019920

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.57734
• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.402697
• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.482932

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=602567

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Iris. Eke, et.al., PINCH1 regulates Akt1 activation and enhances radioresistance by inhibiting PP1alpha., The Journal of clinical investigation, 2010, 120
  http://rdf.ncbi.nlm.nih.gov/pubmed/20530873
• Guoji. Guo, et.al., Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst., Developmental cell, 2010, 18
  http://rdf.ncbi.nlm.nih.gov/pubmed/20412781
• http://rdf.ncbi.nlm.nih.gov/pubmed/20932939
• S. Abu-Hayyeh, et.al., Linkage mapping of Lims1l, the murine homolog of the human LIM domain gene PINCH, to mouse chromosome 10., Cytogenetics and cell genetics, 1998, 82
  http://rdf.ncbi.nlm.nih.gov/pubmed/9763658
• Veit. Sandfort, et.al., The role of the focal adhesion protein PINCH1 for the radiosensitivity of adhesion and suspension cell cultures., PloS one, 2010, 5
  http://rdf.ncbi.nlm.nih.gov/pubmed/20927395
• A. Rearden, A new LIM protein containing an autoepitope homologous to "senescent cell antigen"., Biochemical and biophysical research communications, 1994, 201
  http://rdf.ncbi.nlm.nih.gov/pubmed/7517666
• T. Takahashi, et.al., Cloning of hypoxia-inducible factor 1alpha cDNA from chick embryonic ventricular myocytes., Biochemical and biophysical research communications, 2001, 281
  http://rdf.ncbi.nlm.nih.gov/pubmed/11237772
• S M. Wilson, et.al., Mutations in Cdh23 cause nonsyndromic hearing loss in waltzer mice., Genomics, 2001, 74
  http://rdf.ncbi.nlm.nih.gov/pubmed/11386759
• Y. Piao, et.al., Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method., Genome research, 2001, 11
  http://rdf.ncbi.nlm.nih.gov/pubmed/11544199
• Mazen K. El Tamer, et.al., Domain swapping of Citrus limon monoterpene synthases: impact on enzymatic activity and product specificity., Archives of biochemistry and biophysics, 2003, 411
  http://rdf.ncbi.nlm.nih.gov/pubmed/12623068
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• cell-cell adhesion
  http://purl.obolibrary.org/obo/GO_0098609
• perinuclear region of cytoplasm
  http://purl.obolibrary.org/obo/GO_0048471
• metal ion binding
  http://purl.obolibrary.org/obo/GO_0046872
• plasma membrane
  http://purl.obolibrary.org/obo/GO_0005886
• cell-matrix adhesion
  http://purl.obolibrary.org/obo/GO_0007160
• cell junction
  http://purl.obolibrary.org/obo/GO_0030054
• protein binding
  http://purl.obolibrary.org/obo/GO_0005515
• membrane
  http://purl.obolibrary.org/obo/GO_0016020
• macromolecular complex
  http://purl.obolibrary.org/obo/GO_0032991
• zinc ion binding
  http://purl.obolibrary.org/obo/GO_0008270
• protein heterooligomerization
  http://purl.obolibrary.org/obo/GO_0051291
• chordate embryonic development
  http://purl.obolibrary.org/obo/GO_0043009
• establishment or maintenance of cell polarity
  http://purl.obolibrary.org/obo/GO_0007163
• negative regulation of transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0045892
• focal adhesion
  http://purl.obolibrary.org/obo/GO_0005925

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName