CD01887

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD01887

CD01887

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Ptp4a1

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• protein tyrosine phosphatase 4a1

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• protein tyrosine phosphatase type IVA 1
• protein tyrosine phosphatase 4a1
• protein-tyrosine phosphatase 4a1
• protein-tyrosine phosphatase of regenerating liver 1

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• AU019864
• Prl-1
• C130021B01
• AA415290

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/19243

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• protein tyrosine phosphatase 4a1
  http://metadb.riken.jp/db/mgi_rdf/MGI:1277096

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_011200

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000026064

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=601585

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• B. Oh, et.al., Timely translation during the mouse oocyte-to-embryo transition., Development (Cambridge, England), 2000, 127
  http://rdf.ncbi.nlm.nih.gov/pubmed/10934024
• Q. Zeng, et.al., Prenylation-dependent association of protein-tyrosine phosphatases PRL-1, -2, and -3 with the plasma membrane and the early endosome., The Journal of biological chemistry, 2000, 275
  http://rdf.ncbi.nlm.nih.gov/pubmed/10747914
• C H. Rundle, et.al., Developmental expression of the murine Prl-1 protein tyrosine phosphatase gene., The Journal of experimental zoology, 1999, 283
  http://rdf.ncbi.nlm.nih.gov/pubmed/10194868
• R H. Diamond, et.al., PRL-1, a unique nuclear protein tyrosine phosphatase, affects cell growth., Molecular and cellular biology, 1994, 14
  http://rdf.ncbi.nlm.nih.gov/pubmed/8196618
• Susan. Magdaleno, et.al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system., PLoS biology, 2006, 4
  http://rdf.ncbi.nlm.nih.gov/pubmed/16602821
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Ling. Yu, et.al., Oxidative stress-induced expression and modulation of Phosphatase of Regenerating Liver-1 (PRL-1) in mammalian retina., Biochimica et biophysica acta, 2007, 1773
  http://rdf.ncbi.nlm.nih.gov/pubmed/17673310
• Q. Zeng, et.al., Mouse PRL-2 and PRL-3, two potentially prenylated protein tyrosine phosphatases homologous to PRL-1., Biochemical and biophysical research communications, 1998, 244
  http://rdf.ncbi.nlm.nih.gov/pubmed/9514946
• Alessandro. Bulfone, et.al., Telencephalic embryonic subtractive sequences: a unique collection of neurodevelopmental genes., The Journal of neuroscience : the official journal of the Society for Neuroscience, 2005, 25
  http://rdf.ncbi.nlm.nih.gov/pubmed/16107646
• Seth. Blackshaw, et.al., Genomic analysis of mouse retinal development., PLoS biology, 2004, 2
  http://rdf.ncbi.nlm.nih.gov/pubmed/15226823

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• peptidyl-tyrosine dephosphorylation
  http://purl.obolibrary.org/obo/GO_0035335
• phosphatase activity
  http://purl.obolibrary.org/obo/GO_0016791
• cytoplasmic side of plasma membrane
  http://purl.obolibrary.org/obo/GO_0009898
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• prenylated protein tyrosine phosphatase activity
  http://purl.obolibrary.org/obo/GO_0004727
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634
• endoplasmic reticulum
  http://purl.obolibrary.org/obo/GO_0005783
• cell cycle
  http://purl.obolibrary.org/obo/GO_0007049
• dephosphorylation
  http://purl.obolibrary.org/obo/GO_0016311
• protein dephosphorylation
  http://purl.obolibrary.org/obo/GO_0006470
• positive regulation of cell migration
  http://purl.obolibrary.org/obo/GO_0030335
• protein tyrosine phosphatase activity
  http://purl.obolibrary.org/obo/GO_0004725
• cytoskeleton
  http://purl.obolibrary.org/obo/GO_0005856
• phosphoprotein phosphatase activity
  http://purl.obolibrary.org/obo/GO_0004721
• hydrolase activity
  http://purl.obolibrary.org/obo/GO_0016787
• plasma membrane
  http://purl.obolibrary.org/obo/GO_0005886
• endosome
  http://purl.obolibrary.org/obo/GO_0005768
• membrane
  http://purl.obolibrary.org/obo/GO_0016020

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName