CD02190

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD02190

CD02190

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Smc3

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• structural maintenace of chromosomes 3

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• structural maintenance of chromosomes protein 3
• structural maintenace of chromosomes 3
• chromosome segregation protein SmcD
• mad member-interacting protein 1
• basement membrane-associated chondroitin proteoglycan
• chondroitin sulfate proteoglycan 6
• SMC protein 3

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• SmcD
• Bamacan
• HCAP
• Cspg6
• SMC3
• SMC-3
• Mmip1

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/13006

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• structural maintenance of chromosomes 3
  http://metadb.riken.jp/db/mgi_rdf/MGI:1339795

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_007790

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000024974

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.14910

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=606062

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Patrick. Küry, et.al., Gene expression profiling reveals multiple novel intrinsic and extrinsic factors associated with axonal regeneration failure., The European journal of neuroscience, 2004, 19
  http://rdf.ncbi.nlm.nih.gov/pubmed/14750961
• K. Uchimura, et.al., Mouse chondroitin 6-sulfotransferase: molecular cloning, characterization and chromosomal mapping., Glycobiology, 1998, 8
  http://rdf.ncbi.nlm.nih.gov/pubmed/9597547
• N. Darwiche, et.al., Characterization of the components of the putative mammalian sister chromatid cohesion complex., Gene, 1999, 233
  http://rdf.ncbi.nlm.nih.gov/pubmed/10375619
• Michael H. Kagey, et.al., Mediator and cohesin connect gene expression and chromatin architecture., Nature, 2010, 467
  http://rdf.ncbi.nlm.nih.gov/pubmed/20720539
• Kristin D. Kernohan, et.al., ATRX partners with cohesin and MeCP2 and contributes to developmental silencing of imprinted genes in the brain., Developmental cell, 2010, 18
  http://rdf.ncbi.nlm.nih.gov/pubmed/20159591
• Caroline. Adelfalk, et.al., Cohesin SMC1beta protects telomeres in meiocytes., The Journal of cell biology, 2009, 187
  http://rdf.ncbi.nlm.nih.gov/pubmed/19841137
• K. Gupta, et.al., Mmip1: a novel leucine zipper protein that reverses the suppressive effects of Mad family members on c-myc., Oncogene, 1998, 16
  http://rdf.ncbi.nlm.nih.gov/pubmed/9528857
• Giancarlo. Ghiselli, et.al., The cohesin SMC3 is a target the for beta-catenin/TCF4 transactivation pathway., The Journal of biological chemistry, 2003, 278
  http://rdf.ncbi.nlm.nih.gov/pubmed/12651860
• Alexander. Kurze, et.al., A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion., The EMBO journal, 2011, 30
  http://rdf.ncbi.nlm.nih.gov/pubmed/21139566
• G. Ghiselli, et.al., Complete cDNA cloning, genomic organization, chromosomal assignment, functional characterization of the promoter, and expression of the murine Bamacan gene., The Journal of biological chemistry, 1999, 274
  http://rdf.ncbi.nlm.nih.gov/pubmed/10358101
• I. Prieto, et.al., Mammalian STAG3 is a cohesin specific to sister chromatid arms in meiosis I., Nature cell biology, 2001, 3
  http://rdf.ncbi.nlm.nih.gov/pubmed/11483963
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• negative regulation of DNA endoreduplication
  http://purl.obolibrary.org/obo/GO_0032876
• chromosome organization
  http://purl.obolibrary.org/obo/GO_0051276
• lateral element
  http://purl.obolibrary.org/obo/GO_0000800
• DNA repair
  http://purl.obolibrary.org/obo/GO_0006281
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• cellular response to DNA damage stimulus
  http://purl.obolibrary.org/obo/GO_0006974
• dynein complex binding
  http://purl.obolibrary.org/obo/GO_0070840
• meiotic cell cycle
  http://purl.obolibrary.org/obo/GO_0051321
• sister chromatid cohesion
  http://purl.obolibrary.org/obo/GO_0007062
• mitotic cell cycle
  http://purl.obolibrary.org/obo/GO_0000278
• chromatin
  http://purl.obolibrary.org/obo/GO_0000785
• chromosome, centromeric region
  http://purl.obolibrary.org/obo/GO_0000775
• cell cycle
  http://purl.obolibrary.org/obo/GO_0007049
• cell division
  http://purl.obolibrary.org/obo/GO_0051301
• chromosome
  http://purl.obolibrary.org/obo/GO_0005694
• protein heterodimerization activity
  http://purl.obolibrary.org/obo/GO_0046982
• protein binding
  http://purl.obolibrary.org/obo/GO_0005515
• spindle pole
  http://purl.obolibrary.org/obo/GO_0000922
• regulation of DNA replication
  http://purl.obolibrary.org/obo/GO_0006275
• nucleotide binding
  http://purl.obolibrary.org/obo/GO_0000166
• nuclear matrix
  http://purl.obolibrary.org/obo/GO_0016363
• ATP binding
  http://purl.obolibrary.org/obo/GO_0005524
• basement membrane
  http://purl.obolibrary.org/obo/GO_0005604
• meiotic cohesin complex
  http://purl.obolibrary.org/obo/GO_0030893
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634
• signal transduction
  http://purl.obolibrary.org/obo/GO_0007165

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map04110
• http://www.genome.jp/dbget-bin/www_bget?map04114

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Oocyte meiosis
• Cell cycle