CD02276

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD02276

CD02276

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Ptrf

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• polymerase I and transcript release factor

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• cavin-1
• polymerase I and transcript release factor

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• Cav-p60
• AW546441
• 2310075E07Rik
• Cavin

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/19285

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• caveolae associated 1
  http://metadb.riken.jp/db/mgi_rdf/MGI:1277968

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_008986

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000004044

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.21864

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=603198

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• P. Jansa, et.al., The transcript release factor PTRF augments ribosomal gene transcription by facilitating reinitiation of RNA polymerase I., Nucleic acids research, 2001, 29
  http://rdf.ncbi.nlm.nih.gov/pubmed/11139612
• T. Hasegawa, et.al., PTRF (polymerase I and transcript-release factor) is tissue-specific and interacts with the BFCOL1 (binding factor of a type-I collagen promoter) zinc-finger transcription factor which binds to the two mouse type-I collagen gene promoters., The Biochemical journal, 2000, 347 Pt 1
  http://rdf.ncbi.nlm.nih.gov/pubmed/10727401
• Shigetoshi. Yokoyama, et.al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58., Developmental cell, 2009, 17
  http://rdf.ncbi.nlm.nih.gov/pubmed/20059953
• Nabila. Aboulaich, et.al., Vectorial proteomics reveal targeting, phosphorylation and specific fragmentation of polymerase I and transcript release factor (PTRF) at the surface of caveolae in human adipocytes., The Biochemical journal, 2004, 383
  http://rdf.ncbi.nlm.nih.gov/pubmed/15242332
• Michelle M. Hill, et.al., PTRF-Cavin, a conserved cytoplasmic protein required for caveola formation and function., Cell, 2008, 132
  http://rdf.ncbi.nlm.nih.gov/pubmed/18191225
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• K. Miyoshi, et.al., Structure of the mouse Stat 3/5 locus: evolution from Drosophila to zebrafish to mouse., Genomics, 2001, 71
  http://rdf.ncbi.nlm.nih.gov/pubmed/11161808
• Michele. Bastiani, et.al., MURC/Cavin-4 and cavin family members form tissue-specific caveolar complexes., The Journal of cell biology, 2009, 185
  http://rdf.ncbi.nlm.nih.gov/pubmed/19546242
• P. Jansa, et.al., Cloning and functional characterization of PTRF, a novel protein which induces dissociation of paused ternary transcription complexes., The EMBO journal, 1998, 17
  http://rdf.ncbi.nlm.nih.gov/pubmed/9582279
• Libin. Liu, et.al., Deletion of Cavin/PTRF causes global loss of caveolae, dyslipidemia, and glucose intolerance., Cell metabolism, 2008, 8
  http://rdf.ncbi.nlm.nih.gov/pubmed/18840361

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• regulation of transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0006355
• rRNA primary transcript binding
  http://purl.obolibrary.org/obo/GO_0042134
• membrane
  http://purl.obolibrary.org/obo/GO_0016020
• mitochondrion
  http://purl.obolibrary.org/obo/GO_0005739
• plasma membrane
  http://purl.obolibrary.org/obo/GO_0005886
• transcription initiation from RNA polymerase I promoter
  http://purl.obolibrary.org/obo/GO_0006361
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634
• caveola
  http://purl.obolibrary.org/obo/GO_0005901
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• RNA binding
  http://purl.obolibrary.org/obo/GO_0003723
• rRNA binding
  http://purl.obolibrary.org/obo/GO_0019843
• endoplasmic reticulum
  http://purl.obolibrary.org/obo/GO_0005783
• termination of RNA polymerase I transcription
  http://purl.obolibrary.org/obo/GO_0006363
• transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0006351
• DNA-templated transcription, termination
  http://purl.obolibrary.org/obo/GO_0006353

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName