CD02518

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD02518

CD02518

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• U2af1

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• splicing factor U2AF 35 kDa subunit
• U2 snRNP auxiliary factor small subunit
• U2 small nuclear ribonucleoprotein auxiliary factor (U2AF),35 kDa
• U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
• U2 auxiliary factor 35 kDa subunit

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• 35kDa
• 2010107D16Rik

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/108121

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
  http://metadb.riken.jp/db/mgi_rdf/MGI:98884

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_024187
• https://www.ncbi.nlm.nih.gov/nuccore/NM_001163769

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000061613

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.379289

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=191317

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Roland H. Friedel, et.al., EUCOMM--the European conditional mouse mutagenesis program., Briefings in functional genomics & proteomics, 2007, 6
  http://rdf.ncbi.nlm.nih.gov/pubmed/17967808
• Patricia Lopes. Pereira, et.al., A new mouse model for the trisomy of the Abcg1-U2af1 region reveals the complexity of the combinatorial genetic code of down syndrome., Human molecular genetics, 2009, 18
  http://rdf.ncbi.nlm.nih.gov/pubmed/19783846
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Alexandre. Reymond, et.al., Human chromosome 21 gene expression atlas in the mouse., Nature, 2002, 420
  http://rdf.ncbi.nlm.nih.gov/pubmed/12466854
• Adrienne E. McKee, et.al., A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain., BMC developmental biology, 2005, 5
  http://rdf.ncbi.nlm.nih.gov/pubmed/16033648
• Yorick. Gitton, et.al., A gene expression map of human chromosome 21 orthologues in the mouse., Nature, 2002, 420
  http://rdf.ncbi.nlm.nih.gov/pubmed/12466855
• Jeremiah. Shepard, et.al., Characterization of U2AF(6), a splicing factor related to U2AF(35)., Molecular and cellular biology, 2002, 22
  http://rdf.ncbi.nlm.nih.gov/pubmed/11739736
• M T. Davisson, et.al., Evolutionary breakpoints on human chromosome 21., Genomics, 2001, 78
  http://rdf.ncbi.nlm.nih.gov/pubmed/11707078
• C L. Kielkopf, et.al., A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer., Cell, 2001, 106
  http://rdf.ncbi.nlm.nih.gov/pubmed/11551507
• T. Rzymski, et.al., PHF5A represents a bridge protein between splicing proteins and ATP-dependent helicases and is differentially expressed during mouse spermatogenesis., Cytogenetic and genome research, 2008, 121
  http://rdf.ncbi.nlm.nih.gov/pubmed/18758164
• Doug. Stryke, et.al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells., Nucleic acids research, 2003, 31
  http://rdf.ncbi.nlm.nih.gov/pubmed/12520002

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• RNA splicing
  http://purl.obolibrary.org/obo/GO_0008380
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634
• http://purl.obolibrary.org/obo/GO_1990904
• catalytic step 2 spliceosome
  http://purl.obolibrary.org/obo/GO_0071013
• nuclear speck
  http://purl.obolibrary.org/obo/GO_0016607
• mRNA processing
  http://purl.obolibrary.org/obo/GO_0006397
• protein binding
  http://purl.obolibrary.org/obo/GO_0005515
• RNA binding
  http://purl.obolibrary.org/obo/GO_0003723
• zinc ion binding
  http://purl.obolibrary.org/obo/GO_0008270
• spliceosomal complex
  http://purl.obolibrary.org/obo/GO_0005681
• RS domain binding
  http://purl.obolibrary.org/obo/GO_0050733
• nucleic acid binding
  http://purl.obolibrary.org/obo/GO_0003676
• nucleotide binding
  http://purl.obolibrary.org/obo/GO_0000166
• metal ion binding
  http://purl.obolibrary.org/obo/GO_0046872

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map03040

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Spliceosome