CD03159

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD03159

CD03159

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Col5a3

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• collagen, type V, alpha 3

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• collagen, type V, alpha 3
• procollagen, type V, alpha 3
• collagen alpha-3(V) chain

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• Pro-alpha3(V)

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/53867

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• collagen, type V, alpha 3
  http://metadb.riken.jp/db/mgi_rdf/MGI:1858212

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_016919

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000004098

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.334994

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=120216

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Yasuhide. Hamada, et.al., The pro-alpha2(XI) collagen gene is expressed in odontoblasts., Biochemical and biophysical research communications, 2010, 392
  http://rdf.ncbi.nlm.nih.gov/pubmed/20059976
• Kenji. Yamaguchi, et.al., Pro-alpha3(V) collagen chain is expressed in bone and its basic N-terminal peptide adheres to osteosarcoma cells., Matrix biology : journal of the International Society for Matrix Biology, 2005, 24
  http://rdf.ncbi.nlm.nih.gov/pubmed/15908193
• Ian. Smyth, et.al., The extracellular matrix gene Frem1 is essential for the normal adhesion of the embryonic epidermis., Proceedings of the National Academy of Sciences of the United States of America, 2004, 101
  http://rdf.ncbi.nlm.nih.gov/pubmed/15345741
• Lely A. Quina, et.al., Brn3a and Nurr1 mediate a gene regulatory pathway for habenula development., The Journal of neuroscience : the official journal of the Society for Neuroscience, 2009, 29
  http://rdf.ncbi.nlm.nih.gov/pubmed/19906978
• Y. Imamura, et.al., The pro-alpha3(V) collagen chain. Complete primary structure, expression domains in adult and developing tissues, and comparison to the structures and expression domains of the other types V and XI procollagen chains., The Journal of biological chemistry, 2000, 275
  http://rdf.ncbi.nlm.nih.gov/pubmed/10722718
• Bagavathi. Gopalakrishnan, et.al., Biosynthetic processing of the Pro-alpha1(V)Pro-alpha2(V)Pro-alpha3(V) procollagen heterotrimer., The Journal of biological chemistry, 2004, 279
  http://rdf.ncbi.nlm.nih.gov/pubmed/15136578
• Thomas. Aberg, et.al., Chondrogenic potential of mouse calvarial mesenchyme., The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society, 2005, 53
  http://rdf.ncbi.nlm.nih.gov/pubmed/15872058
• Yun-Feng. Wu, et.al., The Sp1 and CBF/NF-Y transcription factors cooperatively regulate the mouse pro-alpha3(V) collagen gene (Col5a3) in osteoblastic cells., Acta medica Okayama, 2010, 64
  http://rdf.ncbi.nlm.nih.gov/pubmed/20424664
• Wu. Yun-Feng, et.al., Sp7/Osterix up-regulates the mouse pro-alpha3(V) collagen gene (Col5a3) during the osteoblast differentiation., Biochemical and biophysical research communications, 2010, 394
  http://rdf.ncbi.nlm.nih.gov/pubmed/20206127

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• collagen
  http://purl.obolibrary.org/obo/GO_0005202
• proteoglycan binding
  http://purl.obolibrary.org/obo/GO_0043394
• extracellular matrix organization
  http://purl.obolibrary.org/obo/GO_0030198
• structural molecule activity
  http://purl.obolibrary.org/obo/GO_0005198
• cell-matrix adhesion
  http://purl.obolibrary.org/obo/GO_0007160
• extracellular matrix
  http://purl.obolibrary.org/obo/GO_0031012
• heparin binding
  http://purl.obolibrary.org/obo/GO_0008201

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map04512
• http://www.genome.jp/dbget-bin/www_bget?map04974
• http://www.genome.jp/dbget-bin/www_bget?map05146
• http://www.genome.jp/dbget-bin/www_bget?map04510

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Protein digestion and absorption
• Amoebiasis
• Focal adhesion
• ECM-receptor interaction