CD03578

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD03578

CD03578

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Kars

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• lysyl-tRNA synthetase

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• lysyl-tRNA synthetase
• lysine--tRNA ligase

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• AL033315
• mKIAA0070
• AL033367
• AA589550
• D8Wsu108e
• AL024334
• D8Ertd698e
• LysRS

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/85305

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• lysyl-tRNA synthetase
  http://metadb.riken.jp/db/mgi_rdf/MGI:1934754

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_001130868
• https://www.ncbi.nlm.nih.gov/nuccore/NM_053092

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000031948

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.196544
• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.410491

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=601421

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Roland H. Friedel, et.al., EUCOMM--the European conditional mouse mutagenesis program., Briefings in functional genomics & proteomics, 2007, 6
  http://rdf.ncbi.nlm.nih.gov/pubmed/17967808
• Yu-Nee. Lee, et.al., Nonconventional involvement of LysRS in the molecular mechanism of USF2 transcriptional activity in FcepsilonRI-activated mast cells., Molecular and cellular biology, 2005, 25
  http://rdf.ncbi.nlm.nih.gov/pubmed/16199869
• Piero. Carninci, et.al., Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia., Genome research, 2003, 13
  http://rdf.ncbi.nlm.nih.gov/pubmed/12819125
• Aristides G. Eliopoulos, et.al., The tyrosine kinase Syk regulates TPL2 activation signals., The Journal of biological chemistry, 2006, 281
  http://rdf.ncbi.nlm.nih.gov/pubmed/16291755
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Hibiki. Kawamata, et.al., Lysyl-tRNA synthetase is a target for mutant SOD1 toxicity in mitochondria., The Journal of biological chemistry, 2008, 283
  http://rdf.ncbi.nlm.nih.gov/pubmed/18715867
• S. Maas, et.al., Genomic clustering of tRNA-specific adenosine deaminase ADAT1 and two tRNA synthetases., Mammalian genome : official journal of the International Mammalian Genome Society, 2001, 12
  http://rdf.ncbi.nlm.nih.gov/pubmed/11331948
• David J. Pagliarini, et.al., A mitochondrial protein compendium elucidates complex I disease biology., Cell, 2008, 134
  http://rdf.ncbi.nlm.nih.gov/pubmed/18614015
• Noriko. Okazaki, et.al., Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries., DNA research : an international journal for rapid publication of reports on genes and genomes, 2003, 10
  http://rdf.ncbi.nlm.nih.gov/pubmed/14621295
• M S. Ko, et.al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome., Human molecular genetics, 1998, 7
  http://rdf.ncbi.nlm.nih.gov/pubmed/9811942

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• nucleotide binding
  http://purl.obolibrary.org/obo/GO_0000166
• amino acid binding
  http://purl.obolibrary.org/obo/GO_0016597
• microtubule cytoskeleton
  http://purl.obolibrary.org/obo/GO_0015630
• tRNA aminoacylation for protein translation
  http://purl.obolibrary.org/obo/GO_0006418
• mitochondrion
  http://purl.obolibrary.org/obo/GO_0005739
• ligase activity
  http://purl.obolibrary.org/obo/GO_0016874
• lysyl-tRNA aminoacylation
  http://purl.obolibrary.org/obo/GO_0006430
• aminoacyl-tRNA ligase activity
  http://purl.obolibrary.org/obo/GO_0004812
• tRNA binding
  http://purl.obolibrary.org/obo/GO_0000049
• metal ion binding
  http://purl.obolibrary.org/obo/GO_0046872
• lysine-tRNA ligase activity
  http://purl.obolibrary.org/obo/GO_0004824
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• translation
  http://purl.obolibrary.org/obo/GO_0006412
• ATP binding
  http://purl.obolibrary.org/obo/GO_0005524
• nucleic acid binding
  http://purl.obolibrary.org/obo/GO_0003676
• diadenosine tetraphosphate biosynthetic process
  http://purl.obolibrary.org/obo/GO_0015966
• aminoacyl-tRNA synthetase multienzyme complex
  http://purl.obolibrary.org/obo/GO_0017101

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map00970

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Aminoacyl-tRNA biosynthesis