CD05419

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD05419

CD05419

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Col4a6

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• collagen, type IV, alpha 6

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• procollagen, type IV, alpha 6
• collagen, type IV, alpha 6
• procollagen type IV alpha 6

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• BB116301

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/94216

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• collagen, type IV, alpha 6
  http://metadb.riken.jp/db/mgi_rdf/MGI:2152695

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_053185

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000031273

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.155586

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=303631

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Takayuki. Shindo, et.al., Krüppel-like zinc-finger transcription factor KLF5/BTEB2 is a target for angiotensin II signaling and an essential regulator of cardiovascular remodeling., Nature medicine, 2002, 8
  http://rdf.ncbi.nlm.nih.gov/pubmed/12101409
• N. Nagai, et.al., Localization of type IV collagen a 1 to a 6 chains in basement membrane during mouse molar germ development., The International journal of developmental biology, 2001, 45
  http://rdf.ncbi.nlm.nih.gov/pubmed/11732842
• Ri-ichiroh. Manabe, et.al., Transcriptome-based systematic identification of extracellular matrix proteins., Proceedings of the National Academy of Sciences of the United States of America, 2008, 105
  http://rdf.ncbi.nlm.nih.gov/pubmed/18757743
• W. Lu, et.al., Insertional mutation of the collagen genes Col4a3 and Col4a4 in a mouse model of Alport syndrome., Genomics, 1999, 61
  http://rdf.ncbi.nlm.nih.gov/pubmed/10534397
• Zeynep. Firtina, et.al., Abnormal expression of collagen IV in lens activates unfolded protein response resulting in cataract., The Journal of biological chemistry, 2009, 284
  http://rdf.ncbi.nlm.nih.gov/pubmed/19858219
• K. Saito, et.al., Differential expression of mouse alpha5(IV) and alpha6(IV) collagen genes in epithelial basement membranes., Journal of biochemistry, 2000, 128
  http://rdf.ncbi.nlm.nih.gov/pubmed/10965041
• Chinmay M. Trivedi, et.al., Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic cardiac myocyte proliferation., Developmental cell, 2010, 19
  http://rdf.ncbi.nlm.nih.gov/pubmed/20833366
• Patrick B. Kelley, et.al., Collagen IV in the developing lens capsule., Matrix biology : journal of the International Society for Matrix Biology, 2002, 21
  http://rdf.ncbi.nlm.nih.gov/pubmed/12225806
• Xiaoyang. Bai, et.al., Developmental distribution of collagen IV isoforms and relevance to ocular diseases., Matrix biology : journal of the International Society for Matrix Biology, 2009, 28
  http://rdf.ncbi.nlm.nih.gov/pubmed/19275937
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• structural molecule activity
  http://purl.obolibrary.org/obo/GO_0005198
• basement membrane
  http://purl.obolibrary.org/obo/GO_0005604
• extracellular matrix organization
  http://purl.obolibrary.org/obo/GO_0030198
• collagen
  http://purl.obolibrary.org/obo/GO_0005202
• cellular response to amino acid stimulus
  http://purl.obolibrary.org/obo/GO_0071230

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map04512
• http://www.genome.jp/dbget-bin/www_bget?map05222
• http://www.genome.jp/dbget-bin/www_bget?map04974
• http://www.genome.jp/dbget-bin/www_bget?map05146
• http://www.genome.jp/dbget-bin/www_bget?map04510
• http://www.genome.jp/dbget-bin/www_bget?map05200

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• ECM-receptor interaction
• Focal adhesion
• Amoebiasis
• Small cell lung cancer
• Pathways in cancer
• Protein digestion and absorption