CD06946

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD06946

CD06946

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Stx3

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• syntaxin 3

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• syntaxin 3
• syntaxin-3

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• AW536415
• AA960228
• AV006285
• Syn-3
• syntaxin 3B
• syntaxin 3A

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/20908

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• syntaxin 3
  http://metadb.riken.jp/db/mgi_rdf/MGI:103077

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_001025307
• https://www.ncbi.nlm.nih.gov/nuccore/NM_011502
• https://www.ncbi.nlm.nih.gov/nuccore/NM_152220

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000041488

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.272264

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=600876

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Susan. Magdaleno, et.al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system., PLoS biology, 2006, 4
  http://rdf.ncbi.nlm.nih.gov/pubmed/16602821
• J E. Gerst, SNAREs and SNARE regulators in membrane fusion and exocytosis., Cellular and molecular life sciences : CMLS, 1999, 55
  http://rdf.ncbi.nlm.nih.gov/pubmed/10379359
• S. Lehtonen, et.al., Syntaxin 3 and Munc-18-2 in epithelial cells during kidney development., Kidney international, 1999, 56
  http://rdf.ncbi.nlm.nih.gov/pubmed/10469351
• L C. Abbott, et.al., Developmental expression of calretinin-immunoreactivity in the thalamic eminence of the fetal mouse., International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience, 1999, 17
  http://rdf.ncbi.nlm.nih.gov/pubmed/10479068
• K. Ibaraki, et.al., Identification of four different forms of syntaxin 3., Biochemical and biophysical research communications, 1995, 211
  http://rdf.ncbi.nlm.nih.gov/pubmed/7598732
• K. Riento, et.al., A sec1-related vesicle-transport protein that is expressed predominantly in epithelial cells., European journal of biochemistry, 1996, 239
  http://rdf.ncbi.nlm.nih.gov/pubmed/8774707
• Giuseppe. Procino, et.al., AQP2 exocytosis in the renal collecting duct -- involvement of SNARE isoforms and the regulatory role of Munc18b., Journal of cell science, 2008, 121
  http://rdf.ncbi.nlm.nih.gov/pubmed/18505797
• Leigh B. Curtis, et.al., Syntaxin 3b is a t-SNARE specific for ribbon synapses of the retina., The Journal of comparative neurology, 2008, 510
  http://rdf.ncbi.nlm.nih.gov/pubmed/18683220
• Laura I. Cosen-Binker, et.al., VAMP8 is the v-SNARE that mediates basolateral exocytosis in a mouse model of alcoholic pancreatitis., The Journal of clinical investigation, 2008, 118
  http://rdf.ncbi.nlm.nih.gov/pubmed/18535671
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• apical plasma membrane
  http://purl.obolibrary.org/obo/GO_0016324
• transport
  http://purl.obolibrary.org/obo/GO_0006810
• neuron projection development
  http://purl.obolibrary.org/obo/GO_0031175
• plasma membrane enriched fraction
  http://purl.obolibrary.org/obo/GO_0001950
• exocytosis
  http://purl.obolibrary.org/obo/GO_0006887
• cellular response to oxidative stress
  http://purl.obolibrary.org/obo/GO_0034599
• azurophil granule
  http://purl.obolibrary.org/obo/GO_0042582
• vesicle-mediated transport
  http://purl.obolibrary.org/obo/GO_0016192
• intracellular
  http://purl.obolibrary.org/obo/GO_0005622
• cell
  http://purl.obolibrary.org/obo/GO_0005623
• cell-cell junction
  http://purl.obolibrary.org/obo/GO_0005911
• intracellular protein transport
  http://purl.obolibrary.org/obo/GO_0006886
• neuron projection
  http://purl.obolibrary.org/obo/GO_0043005
• plasma membrane
  http://purl.obolibrary.org/obo/GO_0005886
• arachidonic acid binding
  http://purl.obolibrary.org/obo/GO_0050544
• specific granule
  http://purl.obolibrary.org/obo/GO_0042581
• SNAP receptor activity
  http://purl.obolibrary.org/obo/GO_0005484
• SNARE complex
  http://purl.obolibrary.org/obo/GO_0031201
• neurotransmitter transport
  http://purl.obolibrary.org/obo/GO_0006836
• growth cone
  http://purl.obolibrary.org/obo/GO_0030426
• membrane fusion
  http://purl.obolibrary.org/obo/GO_0061025
• integral component of membrane
  http://purl.obolibrary.org/obo/GO_0016021
• protein binding
  http://purl.obolibrary.org/obo/GO_0005515
• membrane
  http://purl.obolibrary.org/obo/GO_0016020

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map04721
• http://www.genome.jp/dbget-bin/www_bget?map04130

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Synaptic vesicle cycle
• SNARE interactions in vesicular transport