CD07193

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD07193

CD07193

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Shmt2

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• serine hydroxymethyltransferase 2 (mitochondrial)

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• serine hydroxymethyltransferase, mitochondrial
• serine hydroxymethyltransferase 2 (mitochondrial)

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• 2700043D08Rik
• AA408223
• AA986903

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/108037

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• serine hydroxymethyltransferase 2 (mitochondrial)
  http://metadb.riken.jp/db/mgi_rdf/MGI:1277989

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_001252316
• https://www.ncbi.nlm.nih.gov/nuccore/NM_028230

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000025403

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.29890

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=138450

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Vamsi K. Mootha, et.al., Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria., Cell, 2003, 115
  http://rdf.ncbi.nlm.nih.gov/pubmed/14651853
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• David J. Pagliarini, et.al., A mitochondrial protein compendium elucidates complex I disease biology., Cell, 2008, 134
  http://rdf.ncbi.nlm.nih.gov/pubmed/18614015
• Y. Piao, et.al., Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method., Genome research, 2001, 11
  http://rdf.ncbi.nlm.nih.gov/pubmed/11544199
• Sandrine. Da Cruz, et.al., Proteomic analysis of the mouse liver mitochondrial inner membrane., The Journal of biological chemistry, 2003, 278
  http://rdf.ncbi.nlm.nih.gov/pubmed/12865426
• Donald D. Anderson, et.al., SHMT1 and SHMT2 are functionally redundant in nuclear de novo thymidylate biosynthesis., PloS one, 2009, 4
  http://rdf.ncbi.nlm.nih.gov/pubmed/19513116
• Shih-Ping. Liu, et.al., Glycine N-methyltransferase-/- mice develop chronic hepatitis and glycogen storage disease in the liver., Hepatology (Baltimore, Md.), 2007, 46
  http://rdf.ncbi.nlm.nih.gov/pubmed/17937387

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• L-serine biosynthetic process
  http://purl.obolibrary.org/obo/GO_0006564
• glycine biosynthetic process
  http://purl.obolibrary.org/obo/GO_0006545
• one-carbon metabolic process
  http://purl.obolibrary.org/obo/GO_0006730
• L-allo-threonine aldolase activity
  http://purl.obolibrary.org/obo/GO_0008732
• pyridoxal phosphate binding
  http://purl.obolibrary.org/obo/GO_0030170
• identical protein binding
  http://purl.obolibrary.org/obo/GO_0042802
• metabolic process
  http://purl.obolibrary.org/obo/GO_0008152
• protein homotetramerization
  http://purl.obolibrary.org/obo/GO_0051289
• microtubule cytoskeleton
  http://purl.obolibrary.org/obo/GO_0015630
• amino acid binding
  http://purl.obolibrary.org/obo/GO_0016597
• glycine biosynthetic process from serine
  http://purl.obolibrary.org/obo/GO_0019264
• glycine hydroxymethyltransferase activity
  http://purl.obolibrary.org/obo/GO_0004372
• glycine metabolic process
  http://purl.obolibrary.org/obo/GO_0006544
• mitochondrial nucleoid
  http://purl.obolibrary.org/obo/GO_0042645
• chromatin binding
  http://purl.obolibrary.org/obo/GO_0003682
• transferase activity
  http://purl.obolibrary.org/obo/GO_0016740
• mitochondrial inner membrane
  http://purl.obolibrary.org/obo/GO_0005743
• positive regulation of cell proliferation
  http://purl.obolibrary.org/obo/GO_0008284
• mitochondrial intermembrane space
  http://purl.obolibrary.org/obo/GO_0005758
• mitochondrion
  http://purl.obolibrary.org/obo/GO_0005739
• mitochondrial matrix
  http://purl.obolibrary.org/obo/GO_0005759

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map00260
• http://www.genome.jp/dbget-bin/www_bget?map00670
• http://www.genome.jp/dbget-bin/www_bget?map01100
• http://www.genome.jp/dbget-bin/www_bget?map00460

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Glycine
• Cyanoamino acid metabolism
• One carbon pool by folate
• serine and threonine metabolism
• Metabolic pathways