CD07875

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD07875

CD07875

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• B3galt5

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• beta3GalT5
• stage-specific embryonic antigen 3 synthase
• beta-1,3-GalTase 5
• beta-1,3-galactosyltransferase 5
• UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase 5
• SSEA-3 synthase
• beta3Gal-T5
• beta-3-Gx-T5
• UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
• b3Gal-T5
• UDP-Gal:beta-GlcNAc beta-1,3-galactosyltransferase 5

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• 1190002B21Rik
• AU045265
• b3Galt-V

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/93961

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
  http://metadb.riken.jp/db/mgi_rdf/MGI:2136878

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_033149
• https://www.ncbi.nlm.nih.gov/nuccore/NM_001122993

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000074892

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.154783

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=604066

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• M T. Pletcher, et.al., Use of comparative physical and sequence mapping to annotate mouse chromosome 16 and human chromosome 21., Genomics, 2001, 74
  http://rdf.ncbi.nlm.nih.gov/pubmed/11374901
• Dan. Zhu, et.al., Developmental regulation of beta-1,3-galactosyltransferase-1 gene expression in mouse brain., FEBS letters, 2003, 538
  http://rdf.ncbi.nlm.nih.gov/pubmed/12633872
• D. Zhou, et.al., The beta 1,3-galactosyltransferase beta 3GalT-V is a stage-specific embryonic antigen-3 (SSEA-3) synthase., The Journal of biological chemistry, 2000, 275
  http://rdf.ncbi.nlm.nih.gov/pubmed/10837462
• Yorick. Gitton, et.al., A gene expression map of human chromosome 21 orthologues in the mouse., Nature, 2002, 420
  http://rdf.ncbi.nlm.nih.gov/pubmed/12466855
• Catherine A. Dunn, et.al., Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters: the case of primate beta3GAL-T5., Gene, 2005, 364
  http://rdf.ncbi.nlm.nih.gov/pubmed/16112824
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Alexandre. Reymond, et.al., Human chromosome 21 gene expression atlas in the mouse., Nature, 2002, 420
  http://rdf.ncbi.nlm.nih.gov/pubmed/12466854
• Susan. Magdaleno, et.al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system., PLoS biology, 2006, 4
  http://rdf.ncbi.nlm.nih.gov/pubmed/16602821

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• protein glycosylation
  http://purl.obolibrary.org/obo/GO_0006486
• Golgi apparatus
  http://purl.obolibrary.org/obo/GO_0005794
• membrane
  http://purl.obolibrary.org/obo/GO_0016020
• endoplasmic reticulum
  http://purl.obolibrary.org/obo/GO_0005783
• integral component of membrane
  http://purl.obolibrary.org/obo/GO_0016021
• transferase activity
  http://purl.obolibrary.org/obo/GO_0016740
• galactosyltransferase activity
  http://purl.obolibrary.org/obo/GO_0008378
• transferase activity, transferring glycosyl groups
  http://purl.obolibrary.org/obo/GO_0016757

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map01100
• http://www.genome.jp/dbget-bin/www_bget?map00601
• http://www.genome.jp/dbget-bin/www_bget?map00603

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Metabolic pathways
• Glycosphingolipid biosynthesis - globo series
• Glycosphingolipid biosynthesis - lacto and neolacto series