CD07931

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD07931

CD07931

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Smg1

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• PI-3-kinase-related kinase SMG-1
• serine/threonine-protein kinase SMG1
• SMG-1
• phosphatidylinositol 3-kinase-related protein kinase
• SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• C130002K18Rik
• mKIAA0421
• 2610207I05Rik
• 5430435M13Rik

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/233789

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
  http://metadb.riken.jp/db/mgi_rdf/MGI:1919742

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_001031814

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000030655

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.309053

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=607032

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Zuzana. Horejsí, et.al., CK2 phospho-dependent binding of R2TP complex to TEL2 is essential for mTOR and SMG1 stability., Molecular cell, 2010, 39
  http://rdf.ncbi.nlm.nih.gov/pubmed/20864032
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Doug. Stryke, et.al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells., Nucleic acids research, 2003, 31
  http://rdf.ncbi.nlm.nih.gov/pubmed/12520002
• Noriko. Okazaki, et.al., Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries., DNA research : an international journal for rapid publication of reports on genes and genomes, 2003, 10
  http://rdf.ncbi.nlm.nih.gov/pubmed/14621295
• David R. McIlwain, et.al., Smg1 is required for embryogenesis and regulates diverse genes via alternative splicing coupled to nonsense-mediated mRNA decay., Proceedings of the National Academy of Sciences of the United States of America, 2010, 107
  http://rdf.ncbi.nlm.nih.gov/pubmed/20566848
• Roland H. Friedel, et.al., EUCOMM--the European conditional mouse mutagenesis program., Briefings in functional genomics & proteomics, 2007, 6
  http://rdf.ncbi.nlm.nih.gov/pubmed/17967808

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• phosphotransferase activity, alcohol group as acceptor
  http://purl.obolibrary.org/obo/GO_0016773
• kinase activity
  http://purl.obolibrary.org/obo/GO_0016301
• binding
  http://purl.obolibrary.org/obo/GO_0005488
• phosphatidylinositol phosphorylation
  http://purl.obolibrary.org/obo/GO_0046854
• DNA repair
  http://purl.obolibrary.org/obo/GO_0006281
• nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
  http://purl.obolibrary.org/obo/GO_0000184
• transferase activity, transferring phosphorus-containing groups
  http://purl.obolibrary.org/obo/GO_0016772
• transferase activity
  http://purl.obolibrary.org/obo/GO_0016740
• nucleotide binding
  http://purl.obolibrary.org/obo/GO_0000166
• peptidyl-serine phosphorylation
  http://purl.obolibrary.org/obo/GO_0018105
• protein serine/threonine kinase activity
  http://purl.obolibrary.org/obo/GO_0004674
• cellular response to DNA damage stimulus
  http://purl.obolibrary.org/obo/GO_0006974
• metal ion binding
  http://purl.obolibrary.org/obo/GO_0046872
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• phosphorylation
  http://purl.obolibrary.org/obo/GO_0016310
• response to stress
  http://purl.obolibrary.org/obo/GO_0006950
• ATP binding
  http://purl.obolibrary.org/obo/GO_0005524
• protein autophosphorylation
  http://purl.obolibrary.org/obo/GO_0046777
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map03015

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• mRNA surveillance pathway