CD12221

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD12221

CD12221

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Pard6a

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• par-6 (partitioning defective 6,) homolog alpha (C. elegans)

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• PAR-6 alpha
• par-6 (partitioning defective 6,) homolog alpha (C. elegans)
• PAR-6A
• partitioning defective 6 homolog alpha
• Tax interaction protein 40

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• 2610010A15Rik
• TAX40
• Par6c
• Tip-40
• PAR6alpha
• Par6
• Par-6
• 0710008C04Rik

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/56513

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• par-6 family cell polarity regulator alpha
  http://metadb.riken.jp/db/mgi_rdf/MGI:1927223

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_001047436
• https://www.ncbi.nlm.nih.gov/nuccore/NM_019695
• https://www.ncbi.nlm.nih.gov/nuccore/NM_001047435

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000005699

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.472753

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=607484

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• X. Mu, et.al., Gene expression in the developing mouse retina by EST sequencing and microarray analysis., Nucleic acids research, 2001, 29
  http://rdf.ncbi.nlm.nih.gov/pubmed/11812828
• Mingfu. Wu, et.al., Epicardial spindle orientation controls cell entry into the myocardium., Developmental cell, 2010, 19
  http://rdf.ncbi.nlm.nih.gov/pubmed/20643355
• A. Johansson, et.al., The mammalian homologue of the Caenorhabditis elegans polarity protein PAR-6 is a binding partner for the Rho GTPases Cdc42 and Rac1., Journal of cell science, 2000, 113 ( Pt 18)
  http://rdf.ncbi.nlm.nih.gov/pubmed/10954424
• Nan. Gao, et.al., Cdx2 regulates endo-lysosomal function and epithelial cell polarity., Genes & development, 2010, 24
  http://rdf.ncbi.nlm.nih.gov/pubmed/20551175
• T J. Hung, et.al., PAR-6 is a conserved PDZ domain-containing protein that colocalizes with PAR-3 in Caenorhabditis elegans embryos., Development (Cambridge, England), 1999, 126
  http://rdf.ncbi.nlm.nih.gov/pubmed/9834192
• D. Lin, et.al., A mammalian PAR-3-PAR-6 complex implicated in Cdc42/Rac1 and aPKC signalling and cell polarity., Nature cell biology, 2000, 2
  http://rdf.ncbi.nlm.nih.gov/pubmed/10934475
• Pei-lin. Cheng, et.al., Phosphorylation of E3 ligase Smurf1 switches its substrate preference in support of axon development., Neuron, 2011, 69
  http://rdf.ncbi.nlm.nih.gov/pubmed/21262463
• Ahmed H. El-Hashash, et.al., Cell polarity and spindle orientation in the distal epithelium of embryonic lung., Developmental dynamics : an official publication of the American Association of Anatomists, 2011, 240
  http://rdf.ncbi.nlm.nih.gov/pubmed/21246661
• G. Joberty, et.al., The cell-polarity protein Par6 links Par3 and atypical protein kinase C to Cdc42., Nature cell biology, 2000, 2
  http://rdf.ncbi.nlm.nih.gov/pubmed/10934474
• Jason J. Yi, et.al., TGF-beta signaling specifies axons during brain development., Cell, 2010, 142
  http://rdf.ncbi.nlm.nih.gov/pubmed/20603020

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• macromolecular complex
  http://purl.obolibrary.org/obo/GO_0032991
• cell cortex
  http://purl.obolibrary.org/obo/GO_0005938
• membrane
  http://purl.obolibrary.org/obo/GO_0016020
• cell-cell junction maintenance
  http://purl.obolibrary.org/obo/GO_0045217
• establishment of cell polarity
  http://purl.obolibrary.org/obo/GO_0030010
• neuronal cell body
  http://purl.obolibrary.org/obo/GO_0043025
• axonal growth cone
  http://purl.obolibrary.org/obo/GO_0044295
• plasma membrane
  http://purl.obolibrary.org/obo/GO_0005886
• apical part of cell
  http://purl.obolibrary.org/obo/GO_0045177
• Rho GTPase binding
  http://purl.obolibrary.org/obo/GO_0017048
• protein binding
  http://purl.obolibrary.org/obo/GO_0005515
• cell division
  http://purl.obolibrary.org/obo/GO_0051301
• GTP-dependent protein binding
  http://purl.obolibrary.org/obo/GO_0030742
• protein kinase C binding
  http://purl.obolibrary.org/obo/GO_0005080
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• cell cycle
  http://purl.obolibrary.org/obo/GO_0007049
• cell junction
  http://purl.obolibrary.org/obo/GO_0030054
• regulation of cellular localization
  http://purl.obolibrary.org/obo/GO_0060341

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map04144
• http://www.genome.jp/dbget-bin/www_bget?map04530

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Endocytosis
• Tight junction