CD13141

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD13141

CD13141

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Ldb1

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• LIM domain binding 1

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• carboxyl-terminal LIM domain-binding protein 2
• nuclear LIM interactor
• LIM domain-binding factor CLIM2
• mLdb1
• LIM domain binding 1
• LDB-1
• LIM domain-binding protein 1
• CLIM-2

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• NLI
• CLIM2

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/16825

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• LIM domain binding 1
  http://metadb.riken.jp/db/mgi_rdf/MGI:894762

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_010697
• https://www.ncbi.nlm.nih.gov/nuccore/NM_001113408

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000025223

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.327442

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=603451

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• I. Bach, et.al., A family of LIM domain-associated cofactors confer transcriptional synergism between LIM and Otx homeodomain proteins., Genes & development, 1997, 11
  http://rdf.ncbi.nlm.nih.gov/pubmed/9192866
• L W. Jurata, et.al., Nuclear LIM interactor, a rhombotin and LIM homeodomain interacting protein, is expressed early in neuronal development., Proceedings of the National Academy of Sciences of the United States of America, 1996, 93
  http://rdf.ncbi.nlm.nih.gov/pubmed/8876198
• Andreas. Teufel, et.al., Liver-specific Ldb1 deletion results in enhanced liver cancer development., Journal of hepatology, 2010, 53
  http://rdf.ncbi.nlm.nih.gov/pubmed/20828852
• LiQi. Li, et.al., A requirement for Lim domain binding protein 1 in erythropoiesis., The Journal of experimental medicine, 2010, 207
  http://rdf.ncbi.nlm.nih.gov/pubmed/21041453
• Guoji. Guo, et.al., Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst., Developmental cell, 2010, 18
  http://rdf.ncbi.nlm.nih.gov/pubmed/20412781
• A D. Agulnick, et.al., Interactions of the LIM-domain-binding factor Ldb1 with LIM homeodomain proteins., Nature, 1996, 384
  http://rdf.ncbi.nlm.nih.gov/pubmed/8918878
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• J E. Visvader, et.al., The LIM-domain binding protein Ldb1 and its partner LMO2 act as negative regulators of erythroid differentiation., Proceedings of the National Academy of Sciences of the United States of America, 1997, 94
  http://rdf.ncbi.nlm.nih.gov/pubmed/9391090
• L W. Jurata, et.al., Functional analysis of the nuclear LIM domain interactor NLI., Molecular and cellular biology, 1997, 17
  http://rdf.ncbi.nlm.nih.gov/pubmed/9315627
• Sang-Hyun. Song, et.al., Multiple functions of Ldb1 required for beta-globin activation during erythroid differentiation., Blood, 2010, 116
  http://rdf.ncbi.nlm.nih.gov/pubmed/20570862

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• LIM domain binding
  http://purl.obolibrary.org/obo/GO_0030274
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634
• regulation of DNA-templated transcription, elongation
  http://purl.obolibrary.org/obo/GO_0032784
• gastrulation with mouth forming second
  http://purl.obolibrary.org/obo/GO_0001702
• hair follicle development
  http://purl.obolibrary.org/obo/GO_0001942
• positive regulation of cell adhesion
  http://purl.obolibrary.org/obo/GO_0045785
• primitive erythrocyte differentiation
  http://purl.obolibrary.org/obo/GO_0060319
• enzyme binding
  http://purl.obolibrary.org/obo/GO_0019899
• epithelial structure maintenance
  http://purl.obolibrary.org/obo/GO_0010669
• cell-cell junction
  http://purl.obolibrary.org/obo/GO_0005911
• histone H3-K4 acetylation
  http://purl.obolibrary.org/obo/GO_0043973
• cerebellar Purkinje cell differentiation
  http://purl.obolibrary.org/obo/GO_0021702
• transcription factor binding transcription factor activity
  http://purl.obolibrary.org/obo/GO_0000989
• positive regulation of transcription from RNA polymerase II promoter
  http://purl.obolibrary.org/obo/GO_0045944
• nuclear chromatin
  http://purl.obolibrary.org/obo/GO_0000790
• protein self-association
  http://purl.obolibrary.org/obo/GO_0043621
• head development
  http://purl.obolibrary.org/obo/GO_0060322
• Wnt signaling pathway
  http://purl.obolibrary.org/obo/GO_0016055
• negative regulation of transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0045892
• transcription cofactor activity
  http://purl.obolibrary.org/obo/GO_0003712
• negative regulation of erythrocyte differentiation
  http://purl.obolibrary.org/obo/GO_0045647
• positive regulation of hemoglobin biosynthetic process
  http://purl.obolibrary.org/obo/GO_0046985
• anterior/posterior axis specification
  http://purl.obolibrary.org/obo/GO_0009948
• protein homodimerization activity
  http://purl.obolibrary.org/obo/GO_0042803
• DNA binding
  http://purl.obolibrary.org/obo/GO_0003677
• chromatin binding
  http://purl.obolibrary.org/obo/GO_0003682
• transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
  http://purl.obolibrary.org/obo/GO_0000972
• cerebellum development
  http://purl.obolibrary.org/obo/GO_0021549
• enhancer sequence-specific DNA binding
  http://purl.obolibrary.org/obo/GO_0001158
• transcription from RNA polymerase II promoter
  http://purl.obolibrary.org/obo/GO_0006366
• regulation of RNA biosynthetic process
  http://purl.obolibrary.org/obo/GO_2001141
• macromolecular complex
  http://purl.obolibrary.org/obo/GO_0032991
• protein binding
  http://purl.obolibrary.org/obo/GO_0005515
• nucleoplasm part
  http://purl.obolibrary.org/obo/GO_0044451
• cellular component assembly
  http://purl.obolibrary.org/obo/GO_0022607

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map05202

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Transcriptional misregulation in cancers