Brain Transcriptome Database (BrainTx)
トランスクリプトームデータ
CD13141
http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD13141
CD13141(トランスクリプトームデータ)
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CD13141
トランスクリプトームデータ
遺伝子シンボル
http://metadb.riken.jp/db/BrainTx/geneSymbol
Ldb1
遺伝子名
http://metadb.riken.jp/db/BrainTx/geneName
LIM domain binding 1
別名
http://metadb.riken.jp/db/BrainTx/alt_name
carboxyl-terminal LIM domain-binding protein 2
nuclear LIM interactor
LIM domain-binding factor CLIM2
mLdb1
LIM domain binding 1
LDB-1
LIM domain-binding protein 1
CLIM-2
別名略称
http://metadb.riken.jp/db/BrainTx/alt_symbol
NLI
CLIM2
NCBI遺伝子
http://metadb.riken.jp/db/BrainTx/NCBIGene
https://www.ncbi.nlm.nih.gov/gene/16825
MGI遺伝子
http://metadb.riken.jp/db/BrainTx/mgiGene
LIM domain binding 1
http://metadb.riken.jp/db/mgi_rdf/MGI:894762
BrainTx遺伝子
http://metadb.riken.jp/db/BrainTx/brainTxGene
脳発現画像
http://metadb.riken.jp/db/BrainTx/brainExpressionImage
時系列発現 (小脳)
http://metadb.riken.jp/db/BrainTx/brainExpression
脳発現特異性/組織別発現
http://metadb.riken.jp/db/BrainTx/brainSpecificity
BrainTx遺伝子カテゴリー
http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory
NCBI Accession Number
http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber
https://www.ncbi.nlm.nih.gov/nuccore/NM_010697
https://www.ncbi.nlm.nih.gov/nuccore/NM_001113408
Ensembl 遺伝子
http://metadb.riken.jp/db/BrainTx/ensemblGene
http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000025223
UniGene 遺伝子
http://metadb.riken.jp/db/BrainTx/uniGene
https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.327442
OMIM ID
http://metadb.riken.jp/db/BrainTx/omim
https://www.omim.org/entry/603434?search=603434&highlight=603451
PubMed ID (PMID)
http://rdf.ncbi.nlm.nih.gov/pubmed/
I. Bach, et.al., A family of LIM domain-associated cofactors confer transcriptional synergism between LIM and Otx homeodomain proteins., Genes & development, 1997, 11
http://rdf.ncbi.nlm.nih.gov/pubmed/9192866
L W. Jurata, et.al., Nuclear LIM interactor, a rhombotin and LIM homeodomain interacting protein, is expressed early in neuronal development., Proceedings of the National Academy of Sciences of the United States of America, 1996, 93
http://rdf.ncbi.nlm.nih.gov/pubmed/8876198
Andreas. Teufel, et.al., Liver-specific Ldb1 deletion results in enhanced liver cancer development., Journal of hepatology, 2010, 53
http://rdf.ncbi.nlm.nih.gov/pubmed/20828852
LiQi. Li, et.al., A requirement for Lim domain binding protein 1 in erythropoiesis., The Journal of experimental medicine, 2010, 207
http://rdf.ncbi.nlm.nih.gov/pubmed/21041453
Guoji. Guo, et.al., Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst., Developmental cell, 2010, 18
http://rdf.ncbi.nlm.nih.gov/pubmed/20412781
A D. Agulnick, et.al., Interactions of the LIM-domain-binding factor Ldb1 with LIM homeodomain proteins., Nature, 1996, 384
http://rdf.ncbi.nlm.nih.gov/pubmed/8918878
Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
J E. Visvader, et.al., The LIM-domain binding protein Ldb1 and its partner LMO2 act as negative regulators of erythroid differentiation., Proceedings of the National Academy of Sciences of the United States of America, 1997, 94
http://rdf.ncbi.nlm.nih.gov/pubmed/9391090
L W. Jurata, et.al., Functional analysis of the nuclear LIM domain interactor NLI., Molecular and cellular biology, 1997, 17
http://rdf.ncbi.nlm.nih.gov/pubmed/9315627
Sang-Hyun. Song, et.al., Multiple functions of Ldb1 required for beta-globin activation during erythroid differentiation., Blood, 2010, 116
http://rdf.ncbi.nlm.nih.gov/pubmed/20570862
Gene Ontology
http://metadb.riken.jp/db/BrainTx/golink
LIM domain binding
http://purl.obolibrary.org/obo/GO_0030274
nucleus
http://purl.obolibrary.org/obo/GO_0005634
regulation of DNA-templated transcription, elongation
http://purl.obolibrary.org/obo/GO_0032784
gastrulation with mouth forming second
http://purl.obolibrary.org/obo/GO_0001702
hair follicle development
http://purl.obolibrary.org/obo/GO_0001942
positive regulation of cell adhesion
http://purl.obolibrary.org/obo/GO_0045785
primitive erythrocyte differentiation
http://purl.obolibrary.org/obo/GO_0060319
enzyme binding
http://purl.obolibrary.org/obo/GO_0019899
epithelial structure maintenance
http://purl.obolibrary.org/obo/GO_0010669
cell-cell junction
http://purl.obolibrary.org/obo/GO_0005911
histone H3-K4 acetylation
http://purl.obolibrary.org/obo/GO_0043973
cerebellar Purkinje cell differentiation
http://purl.obolibrary.org/obo/GO_0021702
transcription factor binding transcription factor activity
http://purl.obolibrary.org/obo/GO_0000989
positive regulation of transcription from RNA polymerase II promoter
http://purl.obolibrary.org/obo/GO_0045944
nuclear chromatin
http://purl.obolibrary.org/obo/GO_0000790
protein self-association
http://purl.obolibrary.org/obo/GO_0043621
head development
http://purl.obolibrary.org/obo/GO_0060322
Wnt signaling pathway
http://purl.obolibrary.org/obo/GO_0016055
negative regulation of transcription, DNA-templated
http://purl.obolibrary.org/obo/GO_0045892
transcription cofactor activity
http://purl.obolibrary.org/obo/GO_0003712
negative regulation of erythrocyte differentiation
http://purl.obolibrary.org/obo/GO_0045647
positive regulation of hemoglobin biosynthetic process
http://purl.obolibrary.org/obo/GO_0046985
anterior/posterior axis specification
http://purl.obolibrary.org/obo/GO_0009948
protein homodimerization activity
http://purl.obolibrary.org/obo/GO_0042803
DNA binding
http://purl.obolibrary.org/obo/GO_0003677
chromatin binding
http://purl.obolibrary.org/obo/GO_0003682
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
http://purl.obolibrary.org/obo/GO_0000972
cerebellum development
http://purl.obolibrary.org/obo/GO_0021549
enhancer sequence-specific DNA binding
http://purl.obolibrary.org/obo/GO_0001158
transcription from RNA polymerase II promoter
http://purl.obolibrary.org/obo/GO_0006366
regulation of RNA biosynthetic process
http://purl.obolibrary.org/obo/GO_2001141
macromolecular complex
http://purl.obolibrary.org/obo/GO_0032991
protein binding
http://purl.obolibrary.org/obo/GO_0005515
nucleoplasm part
http://purl.obolibrary.org/obo/GO_0044451
cellular component assembly
http://purl.obolibrary.org/obo/GO_0022607
InterPro ID
http://metadb.riken.jp/db/BrainTx/interPro
KEGG Pathway ID
http://metadb.riken.jp/db/BrainTx/keggPathwayID
http://www.genome.jp/dbget-bin/www_bget?map05202
KEGG Pathway 名称
http://metadb.riken.jp/db/BrainTx/keggPathwayName
Transcriptional misregulation in cancers
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