CD14853

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD14853

CD14853

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Srrm1

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• serine/arginine repetitive matrix 1

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• plenty-of-prolines 101
• serine/arginine repetitive matrix protein 1
• Ser/Arg-related nuclear matrix protein
• serine/arginine repetitive matrix 1
• plenty-of-prolines-101

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• AA407769
• POP101
• Srm160

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/51796

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• serine/arginine repetitive matrix 1
  http://metadb.riken.jp/db/mgi_rdf/MGI:1858303

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_001130477
• https://www.ncbi.nlm.nih.gov/nuccore/NM_016799

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028809

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.1963

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=605975

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Susan. Magdaleno, et.al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system., PLoS biology, 2006, 4
  http://rdf.ncbi.nlm.nih.gov/pubmed/16602821
• Brad G. Hoffman, et.al., Identification of transcripts with enriched expression in the developing and adult pancreas., Genome biology, 2008, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/18554416
• Richard P. Munton, et.al., Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations., Molecular & cellular proteomics : MCP, 2007, 6
  http://rdf.ncbi.nlm.nih.gov/pubmed/17114649
• Lina A. Thoren, et.al., UPF2 is a critical regulator of liver development, function and regeneration., PloS one, 2010, 5
  http://rdf.ncbi.nlm.nih.gov/pubmed/20657840
• Gilda. Cobellis, et.al., Tagging genes with cassette-exchange sites., Nucleic acids research, 2005, 33
  http://rdf.ncbi.nlm.nih.gov/pubmed/15741177
• H G. Sutherland, et.al., Large-scale identification of mammalian proteins localized to nuclear sub-compartments., Human molecular genetics, 2001, 10
  http://rdf.ncbi.nlm.nih.gov/pubmed/11555636
• Alexander N. Combes, et.al., Three-dimensional visualization of testis cord morphogenesis, a novel tubulogenic mechanism in development., Developmental dynamics : an official publication of the American Association of Anatomists, 2009, 238
  http://rdf.ncbi.nlm.nih.gov/pubmed/19334288
• Bryan A. Ballif, et.al., Phosphoproteomic analysis of the developing mouse brain., Molecular & cellular proteomics : MCP, 2004, 3
  http://rdf.ncbi.nlm.nih.gov/pubmed/15345747
• B J. Blencowe, et.al., A coactivator of pre-mRNA splicing., Genes & development, 1998, 12
  http://rdf.ncbi.nlm.nih.gov/pubmed/9531537
• Doug. Stryke, et.al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells., Nucleic acids research, 2003, 31
  http://rdf.ncbi.nlm.nih.gov/pubmed/12520002

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• catalytic step 2 spliceosome
  http://purl.obolibrary.org/obo/GO_0071013
• mRNA processing
  http://purl.obolibrary.org/obo/GO_0006397
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634
• RNA splicing
  http://purl.obolibrary.org/obo/GO_0008380
• nuclear matrix
  http://purl.obolibrary.org/obo/GO_0016363
• spliceosomal complex
  http://purl.obolibrary.org/obo/GO_0005681
• RNA splicing, via transesterification reactions
  http://purl.obolibrary.org/obo/GO_0000375
• RNA binding
  http://purl.obolibrary.org/obo/GO_0003723
• DNA binding
  http://purl.obolibrary.org/obo/GO_0003677
• mRNA splicing, via spliceosome
  http://purl.obolibrary.org/obo/GO_0000398

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map03013
• http://www.genome.jp/dbget-bin/www_bget?map03015

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• mRNA surveillance pathway
• RNA transport