CD15375

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD15375

CD15375

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Plod1

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
• procollagen-lysine,2-oxoglutarate 5-dioxygenase 1

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• LH1
• Plod
• Lh1
• AV007929
• 2410042F05Rik
• AI854890
• lysyl hydroxylase 1

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/18822

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
  http://metadb.riken.jp/db/mgi_rdf/MGI:99907

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_011122

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000019055

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.37371

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=153454

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Antti M. Salo, et.al., The lysyl hydroxylase isoforms are widely expressed during mouse embryogenesis, but obtain tissue- and cell-specific patterns in the adult., Matrix biology : journal of the International Society for Matrix Biology, 2006, 25
  http://rdf.ncbi.nlm.nih.gov/pubmed/16996725
• Susan. Magdaleno, et.al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system., PLoS biology, 2006, 4
  http://rdf.ncbi.nlm.nih.gov/pubmed/16602821
• Jinsheng. Weng, et.al., Deletion of G protein-coupled receptor 48 leads to ocular anterior segment dysgenesis (ASD) through down-regulation of Pitx2., Proceedings of the National Academy of Sciences of the United States of America, 2008, 105
  http://rdf.ncbi.nlm.nih.gov/pubmed/18424556
• H. Ruotsalainen, et.al., Characterization of cDNAs for mouse lysyl hydroxylase 1, 2 and 3, their phylogenetic analysis and tissue-specific expression in the mouse., Matrix biology : journal of the International Society for Matrix Biology, 1999, 18
  http://rdf.ncbi.nlm.nih.gov/pubmed/10429951
• P J. McClive, et.al., Assignment of the mouse homologues of 6 loci from HSA1p to chromosomes 3 and 4., Genomics, 1994, 23
  http://rdf.ncbi.nlm.nih.gov/pubmed/7829080
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• T A. Hjalt, et.al., PITX2 regulates procollagen lysyl hydroxylase (PLOD) gene expression: implications for the pathology of Rieger syndrome., The Journal of cell biology, 2001, 152
  http://rdf.ncbi.nlm.nih.gov/pubmed/11157981
• Kati. Takaluoma, et.al., Tissue-specific changes in the hydroxylysine content and cross-links of collagens and alterations in fibril morphology in lysyl hydroxylase 1 knock-out mice., The Journal of biological chemistry, 2007, 282
  http://rdf.ncbi.nlm.nih.gov/pubmed/17197443
• L. Sipilä, et.al., The genes encoding mouse lysyl hydroxylase isoforms map to chromosomes 4,5, and 9., Mammalian genome : official journal of the International Mammalian Genome Society, 2000, 11
  http://rdf.ncbi.nlm.nih.gov/pubmed/11130984
• T. Hautala, et.al., Cloning of human lysyl hydroxylase: complete cDNA-derived amino acid sequence and assignment of the gene (PLOD) to chromosome 1p36.3----p36.2., Genomics, 1992, 13
  http://rdf.ncbi.nlm.nih.gov/pubmed/1577494

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• peptide binding
  http://purl.obolibrary.org/obo/GO_0042277
• oxidation-reduction process
  http://purl.obolibrary.org/obo/GO_0055114
• endoplasmic reticulum
  http://purl.obolibrary.org/obo/GO_0005783
• oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
  http://purl.obolibrary.org/obo/GO_0016702
• oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
  http://purl.obolibrary.org/obo/GO_0016706
• procollagen-lysine 5-dioxygenase activity
  http://purl.obolibrary.org/obo/GO_0008475
• membrane
  http://purl.obolibrary.org/obo/GO_0016020
• iron ion binding
  http://purl.obolibrary.org/obo/GO_0005506
• soluble fraction
  http://purl.obolibrary.org/obo/GO_0005625
• oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
  http://purl.obolibrary.org/obo/GO_0016705
• collagen
  http://purl.obolibrary.org/obo/GO_0005202
• ferrous iron binding
  http://purl.obolibrary.org/obo/GO_0008198
• oxidoreductase activity
  http://purl.obolibrary.org/obo/GO_0016491
• epidermis development
  http://purl.obolibrary.org/obo/GO_0008544
• L-ascorbic acid binding
  http://purl.obolibrary.org/obo/GO_0031418
• metal ion binding
  http://purl.obolibrary.org/obo/GO_0046872
• peptidyl-lysine hydroxylation
  http://purl.obolibrary.org/obo/GO_0017185

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map00310

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Lysine degradation