CD17326

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD17326

CD17326

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Upf1

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• UPF1 regulator of nonsense transcripts homolog (yeast)

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• UPF1 regulator of nonsense transcripts homolog (yeast)
• ATP-dependent helicase RENT1
• nonsense mRNA reducing factor 1
• up-frameshift suppressor 1 homolog
• regulator of nonsense transcripts 1
• Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor 1) (NORF1) (Up-frameshift suppressor 1 homolog)
• mUpf1

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• Rent1
• Upflp
• PNORF-1
• B430202H16Rik
• NORF1

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/19704

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• UPF1 regulator of nonsense transcripts homolog (yeast)
  http://metadb.riken.jp/db/mgi_rdf/MGI:107995

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_030680
• https://www.ncbi.nlm.nih.gov/nuccore/NM_001122829

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000058301

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.390048

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=601430

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Constance. Ciaudo, et.al., Nuclear mRNA degradation pathway(s) are implicated in Xist regulation and X chromosome inactivation., PLoS genetics, 2006, 2
  http://rdf.ncbi.nlm.nih.gov/pubmed/16789828
• D. Clarke, et.al., Comparative analysis of human 19p12-13 region in Fugu and mouse., Mammalian genome : official journal of the International Mammalian Genome Society, 2001, 12
  http://rdf.ncbi.nlm.nih.gov/pubmed/11353399
• Lili. Banihashemi, et.al., Upf1/Upf2 regulation of 3' untranslated region splice variants of AUF1 links nonsense-mediated and A+U-rich element-mediated mRNA decay., Molecular and cellular biology, 2006, 26
  http://rdf.ncbi.nlm.nih.gov/pubmed/17000771
• S M. Medghalchi, et.al., Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability., Human molecular genetics, 2001, 10
  http://rdf.ncbi.nlm.nih.gov/pubmed/11152657
• H A. Perlick, et.al., Mammalian orthologues of a yeast regulator of nonsense transcript stability., Proceedings of the National Academy of Sciences of the United States of America, 1996, 93
  http://rdf.ncbi.nlm.nih.gov/pubmed/8855285
• Doug. Stryke, et.al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells., Nucleic acids research, 2003, 31
  http://rdf.ncbi.nlm.nih.gov/pubmed/12520002

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• metal ion binding
  http://purl.obolibrary.org/obo/GO_0046872
• exon-exon junction complex
  http://purl.obolibrary.org/obo/GO_0035145
• helicase activity
  http://purl.obolibrary.org/obo/GO_0004386
• DNA repair
  http://purl.obolibrary.org/obo/GO_0006281
• metabolic process
  http://purl.obolibrary.org/obo/GO_0008152
• chromatin
  http://purl.obolibrary.org/obo/GO_0000785
• DNA replication
  http://purl.obolibrary.org/obo/GO_0006260
• ATP-dependent RNA helicase activity
  http://purl.obolibrary.org/obo/GO_0004004
• regulation of translational termination
  http://purl.obolibrary.org/obo/GO_0006449
• hydrolase activity
  http://purl.obolibrary.org/obo/GO_0016787
• chromatin binding
  http://purl.obolibrary.org/obo/GO_0003682
• DNA binding
  http://purl.obolibrary.org/obo/GO_0003677
• nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
  http://purl.obolibrary.org/obo/GO_0000184
• nucleotide binding
  http://purl.obolibrary.org/obo/GO_0000166
• cell cycle
  http://purl.obolibrary.org/obo/GO_0007049
• RNA binding
  http://purl.obolibrary.org/obo/GO_0003723
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• zinc ion binding
  http://purl.obolibrary.org/obo/GO_0008270
• ATP binding
  http://purl.obolibrary.org/obo/GO_0005524
• histone mRNA catabolic process
  http://purl.obolibrary.org/obo/GO_0071044

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map03013
• http://www.genome.jp/dbget-bin/www_bget?map03015

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• mRNA surveillance pathway
• RNA transport