CD20196

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD20196

CD20196

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Rnf4

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• ring finger protein 4

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• gene trap ROSA b-geo 8
• ring finger protein 4
• E3 ubiquitin ligase RNF4

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• Gtrgeo8
• AU018689

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/19822

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• ring finger protein 4
  http://metadb.riken.jp/db/mgi_rdf/MGI:1201691

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_011278

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000029110

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.21281

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=602850

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Shigetoshi. Yokoyama, et.al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58., Developmental cell, 2009, 17
  http://rdf.ncbi.nlm.nih.gov/pubmed/20059953
• R K. Baker, et.al., In vitro preselection of gene-trapped embryonic stem cell clones for characterizing novel developmentally regulated genes in the mouse., Developmental biology, 1997, 185
  http://rdf.ncbi.nlm.nih.gov/pubmed/9187083
• Xiaoyi V. Hu, et.al., Identification of RING finger protein 4 (RNF4) as a modulator of DNA demethylation through a functional genomics screen., Proceedings of the National Academy of Sciences of the United States of America, 2010, 107
  http://rdf.ncbi.nlm.nih.gov/pubmed/20696907
• N. Galili, et.al., Rnf4, a RING protein expressed in the developing nervous and reproductive systems, interacts with Gscl, a gene within the DiGeorge critical region., Developmental dynamics : an official publication of the American Association of Anatomists, 2000, 218
  http://rdf.ncbi.nlm.nih.gov/pubmed/10822263
• C. Lyngsø, et.al., Interaction between the transcription factor SPBP and the positive cofactor RNF4. An interplay between protein binding zinc fingers., The Journal of biological chemistry, 2000, 275
  http://rdf.ncbi.nlm.nih.gov/pubmed/10849425
• Michael Y. Choi, et.al., A dynamic expression survey identifies transcription factors relevant in mouse digestive tract development., Development (Cambridge, England), 2006, 133
  http://rdf.ncbi.nlm.nih.gov/pubmed/16971476
• L. Chiariotti, et.al., Identification and characterization of a novel RING-finger gene (RNF4) mapping at 4p16.3., Genomics, 1998, 47
  http://rdf.ncbi.nlm.nih.gov/pubmed/9479498
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• A M. Moilanen, et.al., Identification of a novel RING finger protein as a coregulator in steroid receptor-mediated gene transcription., Molecular and cellular biology, 1998, 18
  http://rdf.ncbi.nlm.nih.gov/pubmed/9710597
• Huaiyu. Sun, et.al., Conserved function of RNF4 family proteins in eukaryotes: targeting a ubiquitin ligase to SUMOylated proteins., The EMBO journal, 2007, 26
  http://rdf.ncbi.nlm.nih.gov/pubmed/17762864

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• SUMO polymer binding
  http://purl.obolibrary.org/obo/GO_0032184
• proteasome-mediated ubiquitin-dependent protein catabolic process
  http://purl.obolibrary.org/obo/GO_0043161
• positive regulation of transcription from RNA polymerase II promoter
  http://purl.obolibrary.org/obo/GO_0045944
• progesterone receptor binding
  http://purl.obolibrary.org/obo/GO_0033142
• regulation of kinetochore assembly
  http://purl.obolibrary.org/obo/GO_0090234
• zinc ion binding
  http://purl.obolibrary.org/obo/GO_0008270
• regulation of spindle assembly
  http://purl.obolibrary.org/obo/GO_0090169
• protein K11-linked ubiquitination
  http://purl.obolibrary.org/obo/GO_0070979
• protein K6-linked ubiquitination
  http://purl.obolibrary.org/obo/GO_0085020
• metal ion binding
  http://purl.obolibrary.org/obo/GO_0046872
• nucleosome binding
  http://purl.obolibrary.org/obo/GO_0031491
• positive regulation of transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0045893
• nucleoplasm
  http://purl.obolibrary.org/obo/GO_0005654
• androgen receptor binding
  http://purl.obolibrary.org/obo/GO_0050681
• PML body
  http://purl.obolibrary.org/obo/GO_0016605
• ligase activity
  http://purl.obolibrary.org/obo/GO_0016874
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634
• regulation of transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0006355
• transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0006351
• protein binding
  http://purl.obolibrary.org/obo/GO_0005515
• transcription factor binding
  http://purl.obolibrary.org/obo/GO_0008134
• response to arsenic-containing substance
  http://purl.obolibrary.org/obo/GO_0046685
• estrogen receptor binding
  http://purl.obolibrary.org/obo/GO_0030331
• protein K63-linked ubiquitination
  http://purl.obolibrary.org/obo/GO_0070534
• protein K48-linked ubiquitination
  http://purl.obolibrary.org/obo/GO_0070936
• protein ubiquitination
  http://purl.obolibrary.org/obo/GO_0016567
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• DNA binding
  http://purl.obolibrary.org/obo/GO_0003677
• protein autoubiquitination
  http://purl.obolibrary.org/obo/GO_0051865

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName