CD20405

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD20405

CD20405

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Atg4b

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• autophagy-related 4B (yeast)

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• APG4 (ATG4) autophagy-related homolog B
• autophagy-related cysteine endopeptidase 1
• AUT-like 1 cysteine endopeptidase
• autophagy-related 4B (yeast)
• autophagy-related protein 4 homolog B
• cysteine protease ATG4B
• AUT-like 1, cysteine endopeptidase
• cysteine protease involved in autophagy APG4-B
• autophagin-1

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• autophagin 1
• Apg4b
• Autl1
• Atg4bl
• AW048066
• 2510009N07Rik

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/66615

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• autophagy related 4B, cysteine peptidase
  http://metadb.riken.jp/db/mgi_rdf/MGI:1913865

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_174874

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000026280

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.29087

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=611338

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Joris. Hemelaar, et.al., A single protease, Apg4B, is specific for the autophagy-related ubiquitin-like proteins GATE-16, MAP1-LC3, GABARAP, and Apg8L., The Journal of biological chemistry, 2003, 278
  http://rdf.ncbi.nlm.nih.gov/pubmed/14530254
• Naonobu. Fujita, et.al., An Atg4B mutant hampers the lipidation of LC3 paralogues and causes defects in autophagosome closure., Molecular biology of the cell, 2008, 19
  http://rdf.ncbi.nlm.nih.gov/pubmed/18768752
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Guillermo. Mariño, et.al., Human autophagins, a family of cysteine proteinases potentially implicated in cell degradation by autophagy., The Journal of biological chemistry, 2003, 278
  http://rdf.ncbi.nlm.nih.gov/pubmed/12446702
• Noriko. Okazaki, et.al., Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries., DNA research : an international journal for rapid publication of reports on genes and genomes, 2003, 10
  http://rdf.ncbi.nlm.nih.gov/pubmed/14621295
• Susan. Magdaleno, et.al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system., PLoS biology, 2006, 4
  http://rdf.ncbi.nlm.nih.gov/pubmed/16602821
• Guillermo. Mariño, et.al., Autophagy is essential for mouse sense of balance., The Journal of clinical investigation, 2010, 120
  http://rdf.ncbi.nlm.nih.gov/pubmed/20577052

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• protein transport
  http://purl.obolibrary.org/obo/GO_0015031
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• autophagic vacuole assembly
  http://purl.obolibrary.org/obo/GO_0000045
• metabolic process
  http://purl.obolibrary.org/obo/GO_0008152
• hydrolase activity
  http://purl.obolibrary.org/obo/GO_0016787
• positive regulation of protein catabolic process
  http://purl.obolibrary.org/obo/GO_0045732
• peptidase activity
  http://purl.obolibrary.org/obo/GO_0008233
• autophagy
  http://purl.obolibrary.org/obo/GO_0006914
• transport
  http://purl.obolibrary.org/obo/GO_0006810
• macroautophagy
  http://purl.obolibrary.org/obo/GO_0016236
• cysteine-type endopeptidase activity
  http://purl.obolibrary.org/obo/GO_0004197
• cysteine-type peptidase activity
  http://purl.obolibrary.org/obo/GO_0008234
• proteolysis
  http://purl.obolibrary.org/obo/GO_0006508

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map04140

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Regulation of autophagy