CD22407

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD22407

CD22407

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Spg7

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• spastic paraplegia 7 homolog (human)

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• spastic paraplegia 7 homolog (human)
• cell adhesion regulator
• cell matrix adhesion regulator

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• Cmar
• AU015315
• PGN
• paraplegin
• AI452278

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/234847

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• SPG7, paraplegin matrix AAA peptidase subunit
  http://metadb.riken.jp/db/mgi_rdf/MGI:2385906

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_153176

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000000738

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.292075

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=602783

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Fatima. Ferreirinha, et.al., Axonal degeneration in paraplegin-deficient mice is associated with abnormal mitochondria and impairment of axonal transport., The Journal of clinical investigation, 2004, 113
  http://rdf.ncbi.nlm.nih.gov/pubmed/14722615
• Seth. Blackshaw, et.al., Genomic analysis of mouse retinal development., PLoS biology, 2004, 2
  http://rdf.ncbi.nlm.nih.gov/pubmed/15226823
• Vamsi K. Mootha, et.al., Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria., Cell, 2003, 115
  http://rdf.ncbi.nlm.nih.gov/pubmed/14651853
• Mirko. Koppen, et.al., Variable and tissue-specific subunit composition of mitochondrial m-AAA protease complexes linked to hereditary spastic paraplegia., Molecular and cellular biology, 2007, 27
  http://rdf.ncbi.nlm.nih.gov/pubmed/17101804
• A. Molla, et.al., Cotranscription of two RNA coding for the cell adhesion regulator and its variant in Reh leukemia cells., Biochimica et biophysica acta, 1996, 1315
  http://rdf.ncbi.nlm.nih.gov/pubmed/8611648
• Mirko. Koppen, et.al., Autocatalytic processing of m-AAA protease subunits in mitochondria., Molecular biology of the cell, 2009, 20
  http://rdf.ncbi.nlm.nih.gov/pubmed/19656850
• Paola. Martinelli, et.al., Genetic interaction between the m-AAA protease isoenzymes reveals novel roles in cerebellar degeneration., Human molecular genetics, 2009, 18
  http://rdf.ncbi.nlm.nih.gov/pubmed/19289403
• Y. Piao, et.al., Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method., Genome research, 2001, 11
  http://rdf.ncbi.nlm.nih.gov/pubmed/11544199
• David J. Pagliarini, et.al., A mitochondrial protein compendium elucidates complex I disease biology., Cell, 2008, 134
  http://rdf.ncbi.nlm.nih.gov/pubmed/18614015
• Stéphane. Duvezin-Caubet, et.al., OPA1 processing reconstituted in yeast depends on the subunit composition of the m-AAA protease in mitochondria., Molecular biology of the cell, 2007, 18
  http://rdf.ncbi.nlm.nih.gov/pubmed/17615298

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• anterograde axon cargo transport
  http://purl.obolibrary.org/obo/GO_0008089
• mitochondrion organization
  http://purl.obolibrary.org/obo/GO_0007005
• intracellular
  http://purl.obolibrary.org/obo/GO_0005622
• hydrolase activity
  http://purl.obolibrary.org/obo/GO_0016787
• zinc ion binding
  http://purl.obolibrary.org/obo/GO_0008270
• regulation of cell adhesion
  http://purl.obolibrary.org/obo/GO_0030155
• ATP binding
  http://purl.obolibrary.org/obo/GO_0005524
• mitochondrion
  http://purl.obolibrary.org/obo/GO_0005739
• cell adhesion
  http://purl.obolibrary.org/obo/GO_0007155
• metalloendopeptidase activity
  http://purl.obolibrary.org/obo/GO_0004222
• protein catabolic process
  http://purl.obolibrary.org/obo/GO_0030163
• nucleotide binding
  http://purl.obolibrary.org/obo/GO_0000166
• metallopeptidase activity
  http://purl.obolibrary.org/obo/GO_0008237
• membrane
  http://purl.obolibrary.org/obo/GO_0016020
• integral component of membrane
  http://purl.obolibrary.org/obo/GO_0016021
• http://purl.obolibrary.org/obo/GO_0099641
• peptidase activity
  http://purl.obolibrary.org/obo/GO_0008233
• proteolysis
  http://purl.obolibrary.org/obo/GO_0006508
• nucleoside-triphosphatase activity
  http://purl.obolibrary.org/obo/GO_0017111
• metal ion binding
  http://purl.obolibrary.org/obo/GO_0046872

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName