CD29649

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD29649

CD29649

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Kdm5a

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• lysine (K)-specific demethylase 5A

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• retinoblastoma binding protein 2
• histone demethylase JARID1A
• jumonji, AT rich interactive domain 1A (Rbp2 like)
• retinoblastoma-binding protein 2
• lysine-specific demethylase 5A
• jumonji/ARID domain-containing protein 1A
• RBBP-2
• lysine (K)-specific demethylase 5A

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• AA409370
• Jarid1a
• C76986
• RBP2
• Rbbp2

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/214899

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• lysine (K)-specific demethylase 5A
  http://metadb.riken.jp/db/mgi_rdf/MGI:2136980

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_145997

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000030180

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.463658
• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.404761

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=180202

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Doug. Stryke, et.al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells., Nucleic acids research, 2003, 31
  http://rdf.ncbi.nlm.nih.gov/pubmed/12520002
• Patricia. Jensen, et.al., A neurogenomics approach to gene expression analysis in the developing brain., Brain research. Molecular brain research, 2004, 132
  http://rdf.ncbi.nlm.nih.gov/pubmed/15582152
• Robert. Liefke, et.al., Histone demethylase KDM5A is an integral part of the core Notch-RBP-J repressor complex., Genes & development, 2010, 24
  http://rdf.ncbi.nlm.nih.gov/pubmed/20231316
• Guoji. Guo, et.al., Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst., Developmental cell, 2010, 18
  http://rdf.ncbi.nlm.nih.gov/pubmed/20412781
• Jamy C. Peng, et.al., Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells., Cell, 2009, 139
  http://rdf.ncbi.nlm.nih.gov/pubmed/20064375
• Tadayuki. Ohno, et.al., Modifiers of the jumonji mutation downregulate cyclin D1 expression and cardiac cell proliferation., Biochemical and biophysical research communications, 2004, 317
  http://rdf.ncbi.nlm.nih.gov/pubmed/15081428
• T K. Footz, et.al., Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere., Genome research, 2001, 11
  http://rdf.ncbi.nlm.nih.gov/pubmed/11381032
• Shigetoshi. Yokoyama, et.al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58., Developmental cell, 2009, 17
  http://rdf.ncbi.nlm.nih.gov/pubmed/20059953
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Susan. Magdaleno, et.al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system., PLoS biology, 2006, 4
  http://rdf.ncbi.nlm.nih.gov/pubmed/16602821

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• covalent chromatin modification
  http://purl.obolibrary.org/obo/GO_0016569
• metal ion binding
  http://purl.obolibrary.org/obo/GO_0046872
• transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0006351
• regulation of transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0006355
• positive regulation of transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0045893
• zinc ion binding
  http://purl.obolibrary.org/obo/GO_0008270
• oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
  http://purl.obolibrary.org/obo/GO_0016702
• oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
  http://purl.obolibrary.org/obo/GO_0016706
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634
• DNA binding
  http://purl.obolibrary.org/obo/GO_0003677
• chromatin binding
  http://purl.obolibrary.org/obo/GO_0003682
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• protein binding
  http://purl.obolibrary.org/obo/GO_0005515
• oxidoreductase activity
  http://purl.obolibrary.org/obo/GO_0016491
• intracellular
  http://purl.obolibrary.org/obo/GO_0005622
• oxidation-reduction process
  http://purl.obolibrary.org/obo/GO_0055114
• chromatin organization
  http://purl.obolibrary.org/obo/GO_0006325

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName