CD39829

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD39829

CD39829

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Thbs4

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• thrombospondin 4

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• thrombospondin-4
• thrombospondin 4

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• TSP-4
• TSP4

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/21828

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• thrombospondin 4
  http://metadb.riken.jp/db/mgi_rdf/MGI:1101779

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_011582

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000021702

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.20865

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=600715

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Jiang. Li, et.al., Gene expression profiles in mouse urethral development., BJU international, 2006, 98
  http://rdf.ncbi.nlm.nih.gov/pubmed/16978288
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Sabrina. Margagliotti, et.al., The Onecut transcription factors HNF-6/OC-1 and OC-2 regulate early liver expansion by controlling hepatoblast migration., Developmental biology, 2007, 311
  http://rdf.ncbi.nlm.nih.gov/pubmed/17936262
• Erin Tolhurst. Dunkle, et.al., Thrombospondin-4 and matrix three-dimensionality in axon outgrowth and adhesion in the developing retina., Experimental eye research, 2007, 84
  http://rdf.ncbi.nlm.nih.gov/pubmed/17320079
• Qingshi. Zhao, et.al., Developmental ablation of Id1 and Id3 genes in the vasculature leads to postnatal cardiac phenotypes., Developmental biology, 2011, 349
  http://rdf.ncbi.nlm.nih.gov/pubmed/20937270
• A. Baumeister, et.al., Accumulation of muscle ankyrin repeat protein transcript reveals local activation of primary myotube endcompartments during muscle morphogenesis., The Journal of cell biology, 1997, 139
  http://rdf.ncbi.nlm.nih.gov/pubmed/9382869
• Ella G. Frolova, et.al., Thrombospondin-4 regulates vascular inflammation and atherogenesis., Circulation research, 2010, 107
  http://rdf.ncbi.nlm.nih.gov/pubmed/20884877
• Susan. Magdaleno, et.al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system., PLoS biology, 2006, 4
  http://rdf.ncbi.nlm.nih.gov/pubmed/16602821
• G. Newton, et.al., The thrombospondin-4 gene., Mammalian genome : official journal of the International Mammalian Genome Society, 1999, 10
  http://rdf.ncbi.nlm.nih.gov/pubmed/10501972
• Karen L. Posey, et.al., Skeletal abnormalities in mice lacking extracellular matrix proteins, thrombospondin-1, thrombospondin-3, thrombospondin-5, and type IX collagen., The American journal of pathology, 2008, 172
  http://rdf.ncbi.nlm.nih.gov/pubmed/18467703

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• protein homooligomerization
  http://purl.obolibrary.org/obo/GO_0051260
• integrin binding
  http://purl.obolibrary.org/obo/GO_0005178
• nervous system development
  http://purl.obolibrary.org/obo/GO_0007399
• neuron projection morphogenesis
  http://purl.obolibrary.org/obo/GO_0048812
• laminin-1 binding
  http://purl.obolibrary.org/obo/GO_0043237
• fibronectin binding
  http://purl.obolibrary.org/obo/GO_0001968
• extracellular space
  http://purl.obolibrary.org/obo/GO_0005615
• basement membrane
  http://purl.obolibrary.org/obo/GO_0005604
• positive regulation of peptidyl-tyrosine phosphorylation
  http://purl.obolibrary.org/obo/GO_0050731
• collagen binding
  http://purl.obolibrary.org/obo/GO_0005518
• endothelial cell-cell adhesion
  http://purl.obolibrary.org/obo/GO_0071603
• calcium ion binding
  http://purl.obolibrary.org/obo/GO_0005509
• extracellular region
  http://purl.obolibrary.org/obo/GO_0005576
• heparin binding
  http://purl.obolibrary.org/obo/GO_0008201
• myoblast migration
  http://purl.obolibrary.org/obo/GO_0051451
• proteinaceous extracellular matrix
  http://purl.obolibrary.org/obo/GO_0005578
• cell adhesion
  http://purl.obolibrary.org/obo/GO_0007155
• positive regulation of endothelial cell proliferation
  http://purl.obolibrary.org/obo/GO_0001938
• positive regulation of neutrophil chemotaxis
  http://purl.obolibrary.org/obo/GO_0090023
• structural molecule activity
  http://purl.obolibrary.org/obo/GO_0005198
• neuromuscular junction
  http://purl.obolibrary.org/obo/GO_0031594

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

• http://www.genome.jp/dbget-bin/www_bget?map04512
• http://www.genome.jp/dbget-bin/www_bget?map04350
• http://www.genome.jp/dbget-bin/www_bget?map04145
• http://www.genome.jp/dbget-bin/www_bget?map05144
• http://www.genome.jp/dbget-bin/www_bget?map04510

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName

• Focal adhesion
• TGF-beta signaling pathway
• Phagosome
• ECM-receptor interaction
• Malaria