CD40523

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD40523

CD40523

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Vax2

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• ventral anterior homeobox containing gene 2

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• ventral retina homeodomain protein
• ventral anterior homeobox containing gene 2
• ventral anterior homeobox 2

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/24113

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• ventral anterior homeobox 2
  http://metadb.riken.jp/db/mgi_rdf/MGI:1346018

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_011912

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000034777

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.307165

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=604295

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Stina H. Mui, et.al., The homeodomain protein Vax2 patterns the dorsoventral and nasotemporal axes of the eye., Development (Cambridge, England), 2002, 129
  http://rdf.ncbi.nlm.nih.gov/pubmed/11830578
• C S. Lee, et.al., Transdifferentiation of the ventral retinal pigmented epithelium to neural retina in the growth arrest specific gene 1 mutant., Developmental biology, 2001, 236
  http://rdf.ncbi.nlm.nih.gov/pubmed/11456441
• A M. Barbieri, et.al., A homeobox gene, vax2, controls the patterning of the eye dorsoventral axis., Proceedings of the National Academy of Sciences of the United States of America, 1999, 96
  http://rdf.ncbi.nlm.nih.gov/pubmed/10485894
• Giovanna. Alfano, et.al., Vax2 regulates retinoic acid distribution and cone opsin expression in the vertebrate eye., Development (Cambridge, England), 2011, 138
  http://rdf.ncbi.nlm.nih.gov/pubmed/21148184
• K. Ohsaki, et.al., Expression of the Vax family homeobox genes suggests multiple roles in eye development., Genes to cells : devoted to molecular & cellular mechanisms, 1999, 4
  http://rdf.ncbi.nlm.nih.gov/pubmed/10421837
• João D. Pereira, et.al., Ezh2, the histone methyltransferase of PRC2, regulates the balance between self-renewal and differentiation in the cerebral cortex., Proceedings of the National Academy of Sciences of the United States of America, 2010, 107
  http://rdf.ncbi.nlm.nih.gov/pubmed/20798045
• Rita. Pinter, et.al., Perturbations of microRNA function in mouse dicer mutants produce retinal defects and lead to aberrant axon pathfinding at the optic chiasm., PloS one, 2010, 5
  http://rdf.ncbi.nlm.nih.gov/pubmed/20386732
• Wei. Liu, et.al., Neuroretina specification in mouse embryos requires Six3-mediated suppression of Wnt8b in the anterior neural plate., The Journal of clinical investigation, 2010, 120
  http://rdf.ncbi.nlm.nih.gov/pubmed/20890044
• D. Schulte, et.al., Misexpression of the Emx-related homeobox genes cVax and mVax2 ventralizes the retina and perturbs the retinotectal map., Neuron, 1999, 24
  http://rdf.ncbi.nlm.nih.gov/pubmed/10595508

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• regulation of transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0006355
• dorsal/ventral axis specification
  http://purl.obolibrary.org/obo/GO_0009950
• transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0006351
• transcription regulatory region sequence-specific DNA binding
  http://purl.obolibrary.org/obo/GO_0000976
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634
• embryonic eye morphogenesis
  http://purl.obolibrary.org/obo/GO_0048048
• embryonic camera-type eye morphogenesis
  http://purl.obolibrary.org/obo/GO_0048596
• DNA binding
  http://purl.obolibrary.org/obo/GO_0003677
• sequence-specific DNA binding transcription factor activity
  http://purl.obolibrary.org/obo/GO_0003700
• chromatin DNA binding
  http://purl.obolibrary.org/obo/GO_0031490
• sequence-specific DNA binding
  http://purl.obolibrary.org/obo/GO_0043565
• negative regulation of transcription from RNA polymerase II promoter
  http://purl.obolibrary.org/obo/GO_0000122
• camera-type eye development
  http://purl.obolibrary.org/obo/GO_0043010
• axonogenesis
  http://purl.obolibrary.org/obo/GO_0007409
• retina development in camera-type eye
  http://purl.obolibrary.org/obo/GO_0060041

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName