Brain Transcriptome Database (BrainTx)
トランスクリプトームデータ
CD40607
http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD40607
CD40607(トランスクリプトームデータ)
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CD40607
トランスクリプトームデータ
遺伝子シンボル
http://metadb.riken.jp/db/BrainTx/geneSymbol
Pdgfb
遺伝子名
http://metadb.riken.jp/db/BrainTx/geneName
platelet derived growth factor, B polypeptide
別名
http://metadb.riken.jp/db/BrainTx/alt_name
c-sis
PDGF subunit B
platelet-derived growth factor beta polypeptide
platelet-derived growth factor subunit B
platelet derived growth factor, B polypeptide
PDGF-2
proto-oncogene c-Sis
platelet-derived growth factor B chain
別名略称
http://metadb.riken.jp/db/BrainTx/alt_symbol
Sis
PDGF-B
NCBI遺伝子
http://metadb.riken.jp/db/BrainTx/NCBIGene
https://www.ncbi.nlm.nih.gov/gene/18591
MGI遺伝子
http://metadb.riken.jp/db/BrainTx/mgiGene
platelet derived growth factor, B polypeptide
http://metadb.riken.jp/db/mgi_rdf/MGI:97528
BrainTx遺伝子
http://metadb.riken.jp/db/BrainTx/brainTxGene
脳発現画像
http://metadb.riken.jp/db/BrainTx/brainExpressionImage
時系列発現 (小脳)
http://metadb.riken.jp/db/BrainTx/brainExpression
脳発現特異性/組織別発現
http://metadb.riken.jp/db/BrainTx/brainSpecificity
BrainTx遺伝子カテゴリー
http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory
NCBI Accession Number
http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber
https://www.ncbi.nlm.nih.gov/nuccore/NM_011057
Ensembl 遺伝子
http://metadb.riken.jp/db/BrainTx/ensemblGene
http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000000489
UniGene 遺伝子
http://metadb.riken.jp/db/BrainTx/uniGene
https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.144089
OMIM ID
http://metadb.riken.jp/db/BrainTx/omim
https://www.omim.org/entry/603434?search=603434&highlight=190040
PubMed ID (PMID)
http://rdf.ncbi.nlm.nih.gov/pubmed/
C I. Brannan, et.al., An interspecific linkage map of mouse chromosome 15 positioned with respect to the centromere., Genomics, 1992, 13
http://rdf.ncbi.nlm.nih.gov/pubmed/1354638
Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
Jonah. Cool, et.al., Vascular-mesenchymal cross-talk through Vegf and Pdgf drives organ patterning., Proceedings of the National Academy of Sciences of the United States of America, 2011, 108
http://rdf.ncbi.nlm.nih.gov/pubmed/21173261
F. Rorsman, et.al., Characterization of the mouse PDGF A-chain gene. Evolutionary conservation of gene structure, nucleotide sequence and alternative splicing., Growth factors (Chur, Switzerland), 1992, 6
http://rdf.ncbi.nlm.nih.gov/pubmed/1340209
J B. Hutchins, et.al., Developmental distribution of platelet-derived growth factor in the mouse central nervous system., Brain research. Developmental brain research, 1992, 67
http://rdf.ncbi.nlm.nih.gov/pubmed/1324805
D M. Gorman, et.al., Chromosomal localization and organization of the murine genes encoding the beta subunits (AIC2A and AIC2B) of the interleukin 3, granulocyte/macrophage colony-stimulating factor, and interleukin 5 receptors., The Journal of biological chemistry, 1992, 267
http://rdf.ncbi.nlm.nih.gov/pubmed/1386365
H. Hameister, et.al., Gene order and genetic distance of 13 loci spanning murine chromosome 15., Genomics, 1992, 14
http://rdf.ncbi.nlm.nih.gov/pubmed/1358803
Marta. Terrile, et.al., PDGF-B-driven gliomagenesis can occur in the absence of the proteoglycan NG2., BMC cancer, 2010, 10
http://rdf.ncbi.nlm.nih.gov/pubmed/20939912
Annika. Armulik, et.al., Pericytes regulate the blood-brain barrier., Nature, 2010, 468
http://rdf.ncbi.nlm.nih.gov/pubmed/20944627
Xin-Long. Yan, et.al., Migration of dorsal aorta mesenchymal stem cells induced by mouse embryonic circulation., Developmental dynamics : an official publication of the American Association of Anatomists, 2011, 240
http://rdf.ncbi.nlm.nih.gov/pubmed/21089075
Gene Ontology
http://metadb.riken.jp/db/BrainTx/golink
peptidyl-tyrosine phosphorylation
http://purl.obolibrary.org/obo/GO_0018108
positive regulation of smooth muscle cell migration
http://purl.obolibrary.org/obo/GO_0014911
positive regulation of protein tyrosine kinase activity
http://purl.obolibrary.org/obo/GO_0061098
transforming growth factor beta receptor signaling pathway
http://purl.obolibrary.org/obo/GO_0007179
negative regulation of transcription, DNA-templated
http://purl.obolibrary.org/obo/GO_0045892
reactive oxygen species metabolic process
http://purl.obolibrary.org/obo/GO_0072593
heart development
http://purl.obolibrary.org/obo/GO_0007507
http://purl.obolibrary.org/obo/GO_0097756
cell surface
http://purl.obolibrary.org/obo/GO_0009986
positive regulation of MAPK cascade
http://purl.obolibrary.org/obo/GO_0043410
peptidyl-serine phosphorylation
http://purl.obolibrary.org/obo/GO_0018105
positive regulation of mitotic nuclear division
http://purl.obolibrary.org/obo/GO_0045840
activation of protein kinase activity
http://purl.obolibrary.org/obo/GO_0032147
positive regulation of cyclin-dependent protein kinase activity
http://purl.obolibrary.org/obo/GO_1904031
cell surface binding
http://purl.obolibrary.org/obo/GO_0043498
response to wounding
http://purl.obolibrary.org/obo/GO_0009611
superoxide-generating NADPH oxidase activator activity
http://purl.obolibrary.org/obo/GO_0016176
positive regulation of cell division
http://purl.obolibrary.org/obo/GO_0051781
positive regulation of blood vessel endothelial cell migration
http://purl.obolibrary.org/obo/GO_0043536
basolateral plasma membrane
http://purl.obolibrary.org/obo/GO_0016323
positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway
http://purl.obolibrary.org/obo/GO_0035793
positive regulation of peptidyl-tyrosine phosphorylation
http://purl.obolibrary.org/obo/GO_0050731
negative regulation of platelet activation
http://purl.obolibrary.org/obo/GO_0010544
regulation of peptidyl-tyrosine phosphorylation
http://purl.obolibrary.org/obo/GO_0050730
negative regulation of phosphatidylinositol biosynthetic process
http://purl.obolibrary.org/obo/GO_0010512
positive regulation of transcription, DNA-templated
http://purl.obolibrary.org/obo/GO_0045893
positive regulation of cell migration
http://purl.obolibrary.org/obo/GO_0030335
metanephric glomerular mesangial cell development
http://purl.obolibrary.org/obo/GO_0072255
protein heterodimerization activity
http://purl.obolibrary.org/obo/GO_0046982
positive regulation of protein autophosphorylation
http://purl.obolibrary.org/obo/GO_0031954
actin cytoskeleton organization
http://purl.obolibrary.org/obo/GO_0030036
cytoplasm
http://purl.obolibrary.org/obo/GO_0005737
platelet-derived growth factor receptor binding
http://purl.obolibrary.org/obo/GO_0005161
positive regulation of smooth muscle cell proliferation
http://purl.obolibrary.org/obo/GO_0048661
extracellular region
http://purl.obolibrary.org/obo/GO_0005576
positive regulation of cyclin-dependent protein serine/threonine kinase activity
http://purl.obolibrary.org/obo/GO_0045737
substrate-dependent cell migration
http://purl.obolibrary.org/obo/GO_0006929
positive regulation of glomerular filtration
http://purl.obolibrary.org/obo/GO_0003104
platelet-derived growth factor binding
http://purl.obolibrary.org/obo/GO_0048407
eukaryotic cell surface binding
http://purl.obolibrary.org/obo/GO_0043499
positive regulation of cell proliferation
http://purl.obolibrary.org/obo/GO_0008284
metanephric glomerular mesangial cell proliferation involved in metanephros development
http://purl.obolibrary.org/obo/GO_0072262
positive regulation of chemotaxis
http://purl.obolibrary.org/obo/GO_0050921
positive regulation of calcium ion import
http://purl.obolibrary.org/obo/GO_0090280
growth factor activity
http://purl.obolibrary.org/obo/GO_0008083
positive regulation of DNA replication
http://purl.obolibrary.org/obo/GO_0045740
positive regulation of MAP kinase activity
http://purl.obolibrary.org/obo/GO_0043406
monocyte chemotaxis
http://purl.obolibrary.org/obo/GO_0002548
positive regulation of phosphatidylinositol 3-kinase signaling
http://purl.obolibrary.org/obo/GO_0014068
activation of protein kinase B activity
http://purl.obolibrary.org/obo/GO_0032148
collagen binding
http://purl.obolibrary.org/obo/GO_0005518
positive regulation of phosphatidylinositol 3-kinase activity
http://purl.obolibrary.org/obo/GO_0043552
negative regulation of cell migration
http://purl.obolibrary.org/obo/GO_0030336
protein phosphorylation
http://purl.obolibrary.org/obo/GO_0006468
paracrine signaling
http://purl.obolibrary.org/obo/GO_0038001
positive regulation of glomerular mesangial cell proliferation
http://purl.obolibrary.org/obo/GO_0072126
positive regulation of vasoconstriction
http://purl.obolibrary.org/obo/GO_0045907
positive regulation of ERK1 and ERK2 cascade
http://purl.obolibrary.org/obo/GO_0070374
membrane
http://purl.obolibrary.org/obo/GO_0016020
positive regulation of DNA biosynthetic process
http://purl.obolibrary.org/obo/GO_2000573
cardiac vascular smooth muscle cell differentiation
http://purl.obolibrary.org/obo/GO_0060947
protein homodimerization activity
http://purl.obolibrary.org/obo/GO_0042803
positive regulation of reactive oxygen species metabolic process
http://purl.obolibrary.org/obo/GO_2000379
platelet-derived growth factor receptor signaling pathway
http://purl.obolibrary.org/obo/GO_0048008
branching involved in salivary gland morphogenesis
http://purl.obolibrary.org/obo/GO_0060445
embryonic placenta development
http://purl.obolibrary.org/obo/GO_0001892
positive regulation of fibroblast proliferation
http://purl.obolibrary.org/obo/GO_0048146
cellular response to mycophenolic acid
http://purl.obolibrary.org/obo/GO_0071506
cell chemotaxis
http://purl.obolibrary.org/obo/GO_0060326
positive regulation of endothelial cell proliferation
http://purl.obolibrary.org/obo/GO_0001938
epithelial cell proliferation involved in salivary gland morphogenesis
http://purl.obolibrary.org/obo/GO_0060664
positive regulation of fibroblast growth factor receptor signaling pathway
http://purl.obolibrary.org/obo/GO_0045743
positive regulation of metanephric mesenchymal cell migration
http://purl.obolibrary.org/obo/GO_2000591
cell projection assembly
http://purl.obolibrary.org/obo/GO_0030031
InterPro ID
http://metadb.riken.jp/db/BrainTx/interPro
KEGG Pathway ID
http://metadb.riken.jp/db/BrainTx/keggPathwayID
http://www.genome.jp/dbget-bin/www_bget?map04510
http://www.genome.jp/dbget-bin/www_bget?map05214
http://www.genome.jp/dbget-bin/www_bget?map05202
http://www.genome.jp/dbget-bin/www_bget?map04060
http://www.genome.jp/dbget-bin/www_bget?map05166
http://www.genome.jp/dbget-bin/www_bget?map04540
http://www.genome.jp/dbget-bin/www_bget?map05200
http://www.genome.jp/dbget-bin/www_bget?map04010
http://www.genome.jp/dbget-bin/www_bget?map04810
http://www.genome.jp/dbget-bin/www_bget?map05215
http://www.genome.jp/dbget-bin/www_bget?map05211
http://www.genome.jp/dbget-bin/www_bget?map05218
KEGG Pathway 名称
http://metadb.riken.jp/db/BrainTx/keggPathwayName
MAPK signaling pathway
Regulation of actin cytoskeleton
Glioma
Focal adhesion
Transcriptional misregulation in cancers
Melanoma
Prostate cancer
Pathways in cancer
Cytokine-cytokine receptor interaction
HTLV-I infection
Renal cell carcinoma
Gap junction
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