CD43678

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD43678

CD43678

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Ankrd27

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• ankyrin repeat domain 27 (VPS9 domain)

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• VPS9-ankyrin-repeat protein
• VPS9 domain-containing protein
• ankyrin repeat domain 27 (VPS9 domain)
• mFLJ00040 protein
• ankyrin repeat domain-containing protein 27
• VPS9-ankyrin repeat-containing protein

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• Varp
• AA408090
• BC016493
• D330003H11Rik

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/245886

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• ankyrin repeat domain 27 (VPS9 domain)
  http://metadb.riken.jp/db/mgi_rdf/MGI:2444103

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_178263
• https://www.ncbi.nlm.nih.gov/nuccore/NM_145633

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000034867

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.272620

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Fang. Wang, et.al., Varp interacts with Rab38 and functions as its potential effector., Biochemical and biophysical research communications, 2008, 372
  http://rdf.ncbi.nlm.nih.gov/pubmed/18477474
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Xinjun. Zhang, et.al., Varp is a Rab21 guanine nucleotide exchange factor and regulates endosome dynamics., Journal of cell science, 2006, 119
  http://rdf.ncbi.nlm.nih.gov/pubmed/16525121
• Roland H. Friedel, et.al., EUCOMM--the European conditional mouse mutagenesis program., Briefings in functional genomics & proteomics, 2007, 6
  http://rdf.ncbi.nlm.nih.gov/pubmed/17967808
• Noriko. Okazaki, et.al., Prediction of the coding sequences of mouse homologues of FLJ genes: the complete nucleotide sequences of 110 mouse FLJ-homologous cDnas identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries., DNA research : an international journal for rapid publication of reports on genes and genomes, 2004, 11
  http://rdf.ncbi.nlm.nih.gov/pubmed/15449545
• Noriko. Okazaki, et.al., Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries., DNA research : an international journal for rapid publication of reports on genes and genomes, 2003, 10
  http://rdf.ncbi.nlm.nih.gov/pubmed/14621295
• Kanako. Tamura, et.al., Varp is a novel Rab32/38-binding protein that regulates Tyrp1 trafficking in melanocytes., Molecular biology of the cell, 2009, 20
  http://rdf.ncbi.nlm.nih.gov/pubmed/19403694

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• protein binding
  http://purl.obolibrary.org/obo/GO_0005515
• guanyl-nucleotide exchange factor activity
  http://purl.obolibrary.org/obo/GO_0005085
• early endosome
  http://purl.obolibrary.org/obo/GO_0005769
• early endosome to late endosome transport
  http://purl.obolibrary.org/obo/GO_0045022
• lysosome
  http://purl.obolibrary.org/obo/GO_0005764
• positive regulation of GTPase activity
  http://purl.obolibrary.org/obo/GO_0043547
• cytoplasm
  http://purl.obolibrary.org/obo/GO_0005737
• GTPase activator activity
  http://purl.obolibrary.org/obo/GO_0005096

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName